Scaffold Ga0222713_10002477

Overview

Basic Information

• Taxon OID: 3300021962
• Scaffold ID: Ga0222713_10002477
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_649D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 19743
• Total Scaffold Genes: 35
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 20 (57.14%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 38.06
  • Long. (^o): -121.8
  • Depth (m): 12

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012571	Metagenome	279	Y
F026542	Metagenome / Metatranscriptome	197	Y
F078617	Metagenome / Metatranscriptome	116	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0222713_1000247716	F012571	AGGAG	MSKPIQDPDDVIGVCSECKSDQPMSYMYNSPFAQGGKAVPCKYCGGVVVIVYREARDESLRDSDNNRGIN
Ga0222713_1000247726	F078617	AGGAGG	MQTRVFLSGAIEDVKSDFKYSWRDEATALLDYRGFKAVNPMDYALEEEDCEPKEIVDKNLFLQKSCDILLVEYRLLYRAYIGTDFEMTWAHLNNQPIIVWAHQELQHRVYLKFLATKVADTLEEAVEYISNTYPSNK
Ga0222713_100024774	F026542	AGGA	VNNQNLEKLQQLLSDFLGPQIQEVITSYAEASGNGKYFIEIPDEDTIDLGLDNLASLVAKSSNVYGRAARFAGMARANYKIMEGKYKKKYKSSRVGKNEAEREAAAMEAAEDEYSALITCEAILSLAESMEGAARIASESSRKLMDKVQSMQIASSRENKGHYLDSDFTTY