Scaffold Ga0222713_10002465

Overview

Basic Information

• Taxon OID: 3300021962
• Scaffold ID: Ga0222713_10002465
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_649D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 19800
• Total Scaffold Genes: 52
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 35 (67.31%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 38.06
  • Long. (^o): -121.8
  • Depth (m): 12

Associated Families

Family	Category	Number of Sequences	3D Structure?
F023351	Metagenome / Metatranscriptome	210	Y
F045097	Metagenome / Metatranscriptome	153	Y
F060913	Metagenome / Metatranscriptome	132	Y
F081348	Metagenome	114	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0222713_1000246530	F060913	AGGA	MIKVYQIQLSDAELAAVNNGETSPRIKAYFDRSFDGSFKAENFQYYTHVANVSTLDMEQAFEFMNLWEQPERVEKLIPYVASMSVGDILEMEDGSKFRCASFGFTQMENYQRD
Ga0222713_1000246540	F045097	AGGA	MTKDDLKDKAIEAIPYVAVFGVAALAVYGITKIAQSLDGMDIPLDWGQDSYLTELSKNSRED
Ga0222713_1000246542	F023351	AGGA	MVKESKGGVFAPTDYPVIKRALHSYLLDIMRTEGYSERDPHPDVAVISNLIHRLGRVES
Ga0222713_100024658	F081348	GGAG	MFEKVPYGLKVRVRGNEQDGFVAEYAICTYRFLPFMDNWNLIKHYPSANRGYPSNTFPTLELAKEAAMKQYDSWFDFYKNSEEQTRIAKSQRKVVWKHP