Scaffold Ga0222713_10000882

Overview

Basic Information

• Taxon OID: 3300021962
• Scaffold ID: Ga0222713_10000882
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_649D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 34439
• Total Scaffold Genes: 41
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 34 (82.93%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 38.06
  • Long. (^o): -121.8
  • Depth (m): 12

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000324	Metagenome / Metatranscriptome	1299	Y
F009801	Metagenome	312	Y
F021293	Metagenome	219	Y
F075854	Metagenome	118	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0222713_1000088213	F075854	GGAG	MPRPKPPSPLKGRNMRMSDVEWLMFKELGGADWLRQFVKKKAKLPINHYEKQVEDERMQKGIL
Ga0222713_1000088214	F009801	AGG	MNECKKEYCDFIGSKAFEDDGGWSYEVWTAAQQAVFKRISNRFLSYGDIDYTGKEISNYVDFLAKQDVPE
Ga0222713_1000088225	F021293	GGAG	MIQLRKWYPFVFPTPYDIRAIASEKRAERLDAEYKQAVEAKKVSKAVDALEIELYNKRSRQRTIELEIFNNTRHFDKYV
Ga0222713_1000088232	F000324	N/A	MEGATLSVYHADKGQGLPQHSHDYDHAMVCHSGRCSIRKENVYVEMTKESQPVTLKANEWHEIEALEDGTVFCNVFAENKY