NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222713_10000137

Scaffold Ga0222713_10000137


Overview

Basic Information
Taxon OID3300021962 Open in IMG/M
Scaffold IDGa0222713_10000137 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_649D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)78187
Total Scaffold Genes143 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)83 (58.04%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)38.06Long. (o)-121.8Alt. (m)Depth (m)12
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009033Metagenome / Metatranscriptome324Y
F051716Metagenome143Y
F066485Metagenome / Metatranscriptome126Y

Sequences

Protein IDFamilyRBSSequence
Ga0222713_1000013717F066485AGGAMKIGFSLGRCIRDIVNEEVSVDDVAFLITATNIKTEEQIDNVISVYMGEPGYLLGLDFEKCKEVAHILWDSNRIIQPRAQGMHRHMQPESSIWVDMFPTTLSENESVKKSWDAYRFMLHMVENVDTESMEAFK
Ga0222713_1000013751F009033N/AMNLYLNPEWKKIGISISGGADSALLSFLICSNTDAEIHFTNQIRLWKTRPWQEYVADKVIGWFQKRFKNKFYVHRNLIPPELEWADKGPNIIDEYGKLKSGNQIILRSHNEYIAHKYNLNALYGGINKNPNIPIDGSLSDRDEGHIPPYFEHNGISICHPFVHTTKDWIVKQYYENHIEDLLNLTRSCEGEFEGIDYQTYQPGQYVPTCGKCFWCKERAWAIESSK
Ga0222713_1000013762F051716N/AMNTDYEYYYNDVPGKGLCRNNLIYTSLISKDRKTFCQWYHNDTEYHRGQNQVVDSSLMEEKWLREVNYITQMRNSFPDLVPKILNIDLDKRKIYLEIDGYDFWQQAGTVEQNYDSVLPDWKEQMLDIFRAHRQLGIYKYSLHPSSYFVINGKLKSINYFFCYKDHEAPITINSVLSHISEDRQKDLYLKIDKLGLSVDSPVPFIDLQMLAFDSFKNNFPDDLMEQAKNIYK
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