NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222714_10135585

Scaffold Ga0222714_10135585


Overview

Basic Information
Taxon OID3300021961 Open in IMG/M
Scaffold IDGa0222714_10135585 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_3D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1498
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)38.0516Long. (o)-121.88Alt. (m)Depth (m)13
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009463Metagenome / Metatranscriptome317Y
F012129Metagenome / Metatranscriptome283Y
F013249Metagenome / Metatranscriptome273Y

Sequences

Protein IDFamilyRBSSequence
Ga0222714_101355852F012129N/AMSKDPLHSLKQSLDQLLQADTSIKRKNKKSYDQKRDLFINVVNQFEHAITKSYLLEKDHKIDMSKYEENFYQIIDSLVLLAFGKDVYELLSFYFYERYNPDGSENGLIIEETGEEVFVKDAMELWDLIIRVQPDIFK
Ga0222714_101355853F013249N/AMAKRKLLNLRVVGNSDKLLHQFIDKNKAYIFKETYAGIKHAIRQNKSVAEICSVNTNSAVATIPKEGWENALSSSLGYFESVDEFEMCRDINTTLKTLRNVKRSTSLSKAISGSAIAS
Ga0222714_101355854F009463N/AMDKLQLKDILEGDYSKDVNYTDDTAMYDPLQEDGENQEGVLKYNTTIDGRKYKVSFDVNKNPTKKGIKVKFFPLNDQGIEIQNPTEEQLAQLQNDVATRLAPKFNEFKLEFDEDEDAPEKNVAAFQVPLSSFVSFVANVVFKK
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Institute for Fundamental Biomedical Research
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