Scaffold Ga0222714_10099057

Overview

Basic Information

• Taxon OID: 3300021961
• Scaffold ID: Ga0222714_10099057
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_3D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1849
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (62.50%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 38.0516
  • Long. (^o): -121.88
  • Depth (m): 13

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007525	Metagenome / Metatranscriptome	349	Y
F070119	Metagenome	123	N
F071246	Metagenome	122	N
F072347	Metagenome	121	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0222714_100990571	F007525	N/A	YTQTIPTSKQMPEFYVYQEGAESYAQITYLDRVVDIERNGEMRFHIPETFDGEVIYKDKIIRYSDDLEAAGINDDIQLTQFIKTMGNAGYDIVDNNPWWEVFAHNEDMGEIYDTFYEAVDAGIDYIIDDQWWD
Ga0222714_100990573	F070119	N/A	MWRRQNMNLNSYSSYDFVLPNFTEPGDIIEWEDNIYTIKKVEVLSDGFIIFAIDEMEDDVELLIPDNAILPLMEEQ
Ga0222714_100990575	F071246	AGG	MGKSQTENVADKIVALLADARISQAQWRLWIPRRITEHNKMIIANAKNFADGINEVIADEQIGISKELIFDYQTGHDNGQ
Ga0222714_100990576	F072347	AGGA	MDNRTKAEILVQFTQDEFNSGEYDEFFDYNDLGIPLSIAITQDMVILTDSGEELLEETWKELCLLFNANPDADYESIDDLTIQ