Scaffold Ga0222714_10089109

Overview

Basic Information

• Taxon OID: 3300021961
• Scaffold ID: Ga0222714_10089109
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_3D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1986
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (55.56%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 38.0516
  • Long. (^o): -121.88
  • Depth (m): 13

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003805	Metagenome / Metatranscriptome	467	Y
F004722	Metagenome	426	Y
F006109	Metagenome	381	Y
F017122	Metagenome / Metatranscriptome	242	Y
F043896	Metagenome / Metatranscriptome	155	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0222714_100891092	F003805	GAGG	MRPIEHTAESSFHKAATDKWLVDLFNRQDYRGLLEAALVLNTLHQLERTKSAWAIREAADNLADQFGLDRDSA
Ga0222714_100891093	F043896	GGAG	MSNPELADWARQNWGQVIVDHARMDLLEKLYEWDGRSNPEHPNHHTYTGLYQKYNQN
Ga0222714_100891094	F017122	N/A	MEVVPFQQQADPELRLGEGRSRTSAEKTSLFELKIWLPGQGAMRDLVRAESLQQAITFATNRYPNCKIEVPETAAKKPKLVRSNNGPKESARRRLKLVESKNEQS
Ga0222714_100891095	F006109	N/A	MTRYVVMVEDRWVTAVYGPGKGIGLTASKEDASSWVTYERAIAAARAVAECTNSAVAVHSIDEPAYPKSWK
Ga0222714_100891097	F004722	GGA	MAWLMKEIRQAKTSDLHRAAAFLEWARGVRKGCTKQRSSARVAQSNAWRKDLDEDVRWRV