Scaffold Ga0222714_10081673

Overview

Basic Information

• Taxon OID: 3300021961
• Scaffold ID: Ga0222714_10081673
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_3D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2105
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (100.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 38.0516
  • Long. (^o): -121.88
  • Depth (m): 13

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001629	Metagenome	660	Y
F002420	Metagenome / Metatranscriptome	560	Y
F009328	Metagenome / Metatranscriptome	319	Y
F041736	Metagenome / Metatranscriptome	159	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0222714_100816734	F001629	AGGA	MILDQGKLANGLVDELLALIHKYDESMYMSTVIGVLELVKQQLITESLNTEDDE
Ga0222714_100816735	F002420	GAGG	MSFRESTIKYIKELMRAKTIHEVIAKELHEAHLRKLEAETAAEYAHAAIQYNERRIARLTARLMEHTEEGDYV
Ga0222714_100816737	F009328	GGAGG	MIEVLKQGYHCVVCGRFLPADEHGVIVHDDIEHPQEMDFADEEKPQ
Ga0222714_100816739	F041736	GGAG	MILKSQSMRFVMATMMDVEHEWRTSKWKDKSDMINPDVPMIIQVGDYGYEVQSCGGDGDIEGFVIQCKEEPVCKWEGMECIKL