Scaffold Ga0222714_10066002

Overview

Basic Information

• Taxon OID: 3300021961
• Scaffold ID: Ga0222714_10066002
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_3D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2420
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (90.91%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 38.0516
  • Long. (^o): -121.88
  • Depth (m): 13

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000821	Metagenome / Metatranscriptome	876	Y
F001477	Metagenome / Metatranscriptome	687	Y
F003212	Metagenome / Metatranscriptome	500	Y
F003863	Metagenome	464	Y
F033321	Metagenome	177	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0222714_1006600210	F003863	GGAGG	MESRQVSGKQSIHYRNYRRARDRALARLSKLYPNVYRDLLEEEKELDEQEGTAWSLVGDGKLSIITRVRESTVPPVAGRTDYESPDESYDGGEA
Ga0222714_100660024	F033321	GAGG	MSRELEVLRAEYERASNNPLFDNPSDYCILLDLIQDRIDNIENLYANF
Ga0222714_100660026	F003212	GAG	MKDKWLVTLEVDTYDGDPLLWDWQALLGHEDTSKVISSEFKGRVLPTSEGESNE
Ga0222714_100660027	F000821	GGAG	MNKEYLEAKVDLCLNQAEIDLEQQEIARAIANLRRANSALSQLFGFESEDDNEI
Ga0222714_100660029	F001477	AGG	MSNIYTIHPPKSDLILFYEIVEPTNRGEQVRWGGGDVKSAIQWLYLAPVGSRILVSAWDSDEEDAHLVGQTIDITELIQQAREVGL