Scaffold Ga0222714

Basic Information
Taxon OID	3300021961 Open in IMG/M
Scaffold ID	Ga0222714_10063544 Open in IMG/M
Source Dataset Name	Estuarine water microbial communities from San Francisco Bay, California, United States - C33_3D
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300021961 Open in IMG/M

Scaffold ID

Ga0222714_10063544 Open in IMG/M

Source Dataset Name

Estuarine water microbial communities from San Francisco Bay, California, United States - C33_3D

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	2481
Total Scaffold Genes	10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	10 (100.00%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	7 (100.00%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

2481

Total Scaffold Genes

10 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

10 (100.00%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

7 (100.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Taxonomy

All Organisms → Viruses → Predicted Viral

(Source: DeepVirFinder)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location Name	USA: California
Coordinates	Lat. (^o)	38.0516	Long. (^o)	-121.88	Alt. (m)	Depth (m)	13
Location on Map

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Source Dataset Sampling Location

Location Name

USA: California

Coordinates

Lat. (^o)

38.0516

Long. (^o)

-121.88

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000263	Metagenome / Metatranscriptome	1424	Y
F000441	Metagenome / Metatranscriptome	1136	Y
F000868	Metagenome / Metatranscriptome	853	Y
F001019	Metagenome / Metatranscriptome	804	Y
F001781	Metagenome / Metatranscriptome	635	Y
F024786	Metagenome / Metatranscriptome	204	Y
F069753	Metagenome / Metatranscriptome	123	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0222714_100635441	F000868	GAGG	MSDPHGIIGHYRKGGSMSFLENENQMVIDAEYSYIGEQLVEDWINSNLDEGQMYADWCFADMAESNYLKGRFNQFYDLKPGDQYYIEWDEEK
Ga0222714_1006354410	F069753	AGGCGG	MQSKEHKIGELLANSVEDHFFNPAALGRYLADQPIYTVDRVMEVVAWIIEKQAERYRREVANNGTISEGLIIANMLDKMIDKI
Ga0222714_100635444	F000263	AGG	METTTLPPHLQRMVDAGVTGLDIMHGELKNLMLIGEQDLEAAQKAEELSEEAMDSMERTYAEGYVDALTYMYKLTYDLSFAIGARDEA
Ga0222714_100635445	F001781	GGAG	MKPEDKDKLNECLKILDSTDLGLSLVWLWTWSTINNILDDETYKAKVTQDQMWDNLCEAVSAGHGFSLEYGAEQHQDDVLEWMMNRDYIVDTMFEDDEEEEEDATD
Ga0222714_100635446	F000441	AGGAGG	MQQTDIYINDQLSKAQKLLWSGSLHEVDEAHNIIAKLIKDRMAEKEGQNV
Ga0222714_100635447	F001019	AGGAGG	MSNYEPSLEILEVNYSVSPGGVDTFEVYDVGPDHEIMGVPIYETESLTEAVQYCYNLGKDFIVRTYAEWEMRELASL
Ga0222714_100635448	F024786	GAG	LPVFRVFGTKYQNYYTVIDAADQFEAVEIANALPETAWDTVVTDDVIEATDVYLDEDTSMDLQLNI

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0222714_10063544

Overview

Ecosystem & Geography

Associated Families

Sequences