Scaffold Ga0222714_10051779

Overview

Basic Information

• Taxon OID: 3300021961
• Scaffold ID: Ga0222714_10051779
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_3D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2838
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (14.29%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 38.0516
  • Long. (^o): -121.88
  • Depth (m): 13

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000716	Metagenome / Metatranscriptome	923	Y
F010462	Metagenome / Metatranscriptome	303	Y
F049561	Metagenome / Metatranscriptome	146	N
F096905	Metagenome / Metatranscriptome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0222714_100517792	F000716	N/A	MYIMEKLKEQVRNYQMRSQTVMSYEQDGFSSYQNYLYKRALYGLDALTEKELATMCSKKKQRVINVYKRAQVTLNKFKQQVTIKYSNAIFETLFPNSPITQFLLADTETDEKFKNTLTFKDLGIEKQDIIAIFIAEGILPKNFLDLKDTPLALPRLKYEVKA
Ga0222714_100517794	F010462	N/A	MLYQLPNGKVVNLSVDEFLDLTNEDIQYLMSIDYGEHIRDPFKGSAVEDNTKEKIYDFDFLSLDDEDITNIASDVDPFDDIVDLSEDLDM
Ga0222714_100517795	F049561	AGAAG	MTKIRVELEETDLFNAIKKIIDHGNRVEIAKALTSIIAPHEKLTSIFFKTYFGGSAPQALPEGTMITVNPIVLSYKANVDAMKRLGLLNISGHATAIIKEFRGFHDSHNYYVNFMNVDNNDKTYEDTGFIGYQDVISIIEEL
Ga0222714_100517796	F096905	N/A	MNIITSVIGFDFKSNLVDNDGEPIKTGARRVECLSSEAPNVGTKIGGENWFTNFNEPLLSKIRDYRRRND