Scaffold Ga0222714

Basic Information
Taxon OID	3300021961 Open in IMG/M
Scaffold ID	Ga0222714_10051755 Open in IMG/M
Source Dataset Name	Estuarine water microbial communities from San Francisco Bay, California, United States - C33_3D
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300021961 Open in IMG/M

Scaffold ID

Ga0222714_10051755 Open in IMG/M

Source Dataset Name

Estuarine water microbial communities from San Francisco Bay, California, United States - C33_3D

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	2839
Total Scaffold Genes	11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	10 (90.91%)
Novel Protein Genes	9 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	8 (88.89%)
Associated Families	9

Scaffold Components

Scaffold Length (bps)

2839

Total Scaffold Genes

11 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

10 (90.91%)

Novel Protein Genes

9 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

8 (88.89%)

Associated Families

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Taxonomy

All Organisms → Viruses → Predicted Viral

(Source: DeepVirFinder)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location Name	USA: California
Coordinates	Lat. (^o)	38.0516	Long. (^o)	-121.88	Alt. (m)	Depth (m)	13
Location on Map

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Source Dataset Sampling Location

Location Name

USA: California

Coordinates

Lat. (^o)

38.0516

Long. (^o)

-121.88

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000263	Metagenome / Metatranscriptome	1424	Y
F000441	Metagenome / Metatranscriptome	1136	Y
F001019	Metagenome / Metatranscriptome	804	Y
F001460	Metagenome / Metatranscriptome	690	Y
F002387	Metagenome / Metatranscriptome	565	Y
F013184	Metagenome / Metatranscriptome	273	Y
F022414	Metagenome / Metatranscriptome	214	Y
F063705	Metagenome / Metatranscriptome	129	Y
F096665	Metagenome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0222714_100517551	F096665	N/A	VISESEYDNKCRDCESENTLEYCESDCGEICSSCNWLGEADLEAVKECQTHKVYLDTDKVPEHRKVKSTYTMEEALNG
Ga0222714_1005175511	F022414	AGG	MAKTVEIKVAEQLVNLTDDHWFNPTIFGRYLADQPVYTIDRIMEMLASVISELDKVYELLKVSGTSSEGLMLANELNECIKAYMEDNVISNLKLPKPTLYKVKREEPVRQAVFGWREDKDPFQ
Ga0222714_100517552	F002387	AGGAGG	MASFLEDVNQMVIDAVYQDIAEQLLDDWINNNLDEGQYYADKQFAEMSGDEFIYDEFNKFYELKEGDEDYLE
Ga0222714_100517553	F013184	GAGG	LNRYGFVIKLEGAVMANNEKEAHEKINLHLNDLGDVDSARYDLNWPDVSWDMEYELC
Ga0222714_100517554	F001460	GGAG	MLGYTESDLNRMINAIHDSKLFYLRTPSDLMDKEPLRKDLEDAVSFLQGLWAEGYFDNAN
Ga0222714_100517555	F063705	GAGG	MTKSSHFIEYMKLHLISLNQDWEATKNGEPLKDDEYDPSDDYFQGAIEATEHLLSVATDIMNNNERVYQ
Ga0222714_100517556	F000263	AGG	MNSEDIGLPPHLQRMVNADVSGLDIMHGELKNLMLIAEQDLASALEQEELSEEAMDSMVRTECEGRLDTLAELYKLTYDLSFAIGIRTENRKDGHI
Ga0222714_100517557	F001019	AGGA	MSYEPSLEILEMEYSCSPGGVDTFEVYDKTEIPLSVPIFETESLTEAVQFCYNLGKDFTVKTLAEYHDRELAYEG
Ga0222714_100517559	F000441	GAGG	MKMSDEYINEQLSKAQKLLWSGSLHEVDEAHNIVSNLIKDRVEQVSN

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0222714_10051755

Overview

Ecosystem & Geography

Associated Families

Sequences