Scaffold Ga0222714_10051289

Overview

Basic Information

• Taxon OID: 3300021961
• Scaffold ID: Ga0222714_10051289
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_3D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2856
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (62.50%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 38.0516
  • Long. (^o): -121.88
  • Depth (m): 13

Associated Families

Family	Category	Number of Sequences	3D Structure?
F028157	Metagenome	192	Y
F033428	Metagenome	177	Y
F041769	Metagenome	159	Y
F051124	Metagenome	144	Y
F085645	Metagenome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0222714_100512891	F051124	N/A	MTKKTDPIEQYLNSTGSGWCIKYVLIAVVEDEDSDQSFYIQCLENQTAAETIGLCEAVSHIQKAKIAKAWMAREAEEE
Ga0222714_100512892	F028157	AGGA	MSIADPKFATVLADSDGHSRWVAHTDATDVMAAYRQGGVHLLVTLDPEGNITVAFKPGRHWEASWSPPITLERR
Ga0222714_100512893	F085645	AGGAG	VTKGAEILSEAHDLVTGPRQQAYSHPFDDYWKVSQLFYAFTGIKVSVKQAVMFMICVKLARIGTNDTNGRWHRDSVIDAAGYLACLSMVHEHIEDMHNDAVSRFKDDA
Ga0222714_100512894	F041769	AGGAG	MTHDIDALRQMNEEAQLRISELSVALAHVTEQRDNLEDSLTAAIRETDAAKAQIHVLNATVERLRLHIAQGVEL
Ga0222714_100512897	F033428	AGAAGG	MSRIEGSLVDDSVVIILKARFAKLDDKSRLVIREIADEANGSITMNPPTERRIGIARILLEIAENDGHVDKDLVRSICELRTGKKYNTAGEALADLSWVDAERVWSSFQDIYNNRVQLEYIPVSNHYIIKEYNHVR