NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222714_10046619

Scaffold Ga0222714_10046619


Overview

Basic Information
Taxon OID3300021961 Open in IMG/M
Scaffold IDGa0222714_10046619 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_3D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3046
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (75.00%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Associated Families6

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales → Aphanizomenonaceae → Aphanizomenon → Aphanizomenon flos-aquae → Aphanizomenon flos-aquae WA102(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)38.0516Long. (o)-121.88Alt. (m)Depth (m)13
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010161Metagenome307N
F016812Metagenome244Y
F034183Metagenome175Y
F043402Metagenome156Y
F045758Metagenome / Metatranscriptome152Y
F066782Metagenome126N

Sequences

Protein IDFamilyRBSSequence
Ga0222714_100466192F016812AGGAMSILYPELIKEEDEATFSNNLFKLYKLDERCGKLESPSFRVLYLRDKKIQVHISNHFNSPNCIISYYNIKDKSCIDSRTISKRLYNKIYDHYFEVKKNYY
Ga0222714_100466193F034183AGGMNKLKHLASNLNDEEAALIFQLLLSAFETANYQKSQYTNADLPDESSLMLNVELNTRNVPAVVIEKLKDLLK
Ga0222714_100466194F043402GGAMIEKFEQLVNSLNQKETDNMITLLSLLLRSWEDDKINLYTEIQDFELTTIYKVLNLFNEQTETPSIESE
Ga0222714_100466196F066782GAGMNDEILKKLGYNSIALEMLLKREAQINPEDILMPGERPSINRDPSLNDLSSSVEDDINNIMNKLEEVKELLNNLPEYTMAEERYDEDVRAFPMHKRYAKDELENLIEEIKQLRRYA
Ga0222714_100466197F010161N/AMKEYLDILLLRGIVMTKKNKMLYDALIDYVSYFYNCSDMPEVAKYNALKIFEQLQDEKIDVNDFIPVMRQIQFSLDLLTA
Ga0222714_100466198F045758AGGMKIKELLELESKVSNVEEFFSLLYNQKIHPAFVVFSELSINFRALEGMSVYCLELESAVYFKLCFTDAPFLIYRFNNSNDCENVWCIDFELYKAALRSCVKAVDKKYIPVKDIDERIS
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