NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222714_10045600

Scaffold Ga0222714_10045600


Overview

Basic Information
Taxon OID3300021961 Open in IMG/M
Scaffold IDGa0222714_10045600 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_3D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3090
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (9.09%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families7

Taxonomy
All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)38.0516Long. (o)-121.88Alt. (m)Depth (m)13
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004723Metagenome / Metatranscriptome426Y
F010317Metagenome / Metatranscriptome305Y
F019468Metagenome / Metatranscriptome229N
F023342Metagenome / Metatranscriptome210Y
F026559Metagenome / Metatranscriptome197N
F027823Metagenome / Metatranscriptome193Y
F038644Metagenome / Metatranscriptome165Y

Sequences

Protein IDFamilyRBSSequence
Ga0222714_100456001F023342N/AEYLHDYKYVEPNTELVDILDDALFVKSSLEREMFEQWVKENFLTIPDDVIGKMVNAKQNLRKYENHYITGIRPETYQVTVSEDATKQGGWIVGFENVTIL
Ga0222714_100456002F019468N/AMTIEKTYKLTIKDQTFFLSEEEVSNLYQQCRYALNIKDLPTTNPIKPNIPYPYDNYPWYPSNPSYPYWTLPTTTCDTIPPTEGICVLNTNWKTNLCNNVKSSNDINFISDDMAVHEDNQKWRSSVEKALEKINANKKS
Ga0222714_100456003F010317N/AMKKIYIEKLAEVSGGLPARSMEEHVDGQYQGDSHSIPVEYNLEGILSFPIKVGESVIVERTKRNGVEAFGMFSTSRVTEVGNNYFKTKNSVYSYKFL
Ga0222714_100456004F038644N/AMRAVKITDLPNGAWKQYALEAQRRGIEILGHDILNATDIMLVGAIDMIRELTEKIEKKTE
Ga0222714_100456005F027823N/AMNITAAINIPCVSQTNLWKGCFEAHFMSGREIDVKYPILNTKWKYSHHKLRDDYDGYYYAYEKDIGTGIMFDPWLREFKVNMPISDDVYKTKMYHTTVESNAVLLVLYKKKYV
Ga0222714_100456007F004723N/AMKEGNKFIHTDILGKKYELTYTGTRREVKGCEFEFFADDKGKVCFFTDTEVEKMEKVVTKELKLLLKM
Ga0222714_100456009F026559N/AMKYQIIERFAWYFPDNDIEVSVYRKQSYFRRFVMWLFFDAELRTYYKTIDTCQVKTFQAKKD
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