Scaffold Ga0222714_10039284

Overview

Basic Information

• Taxon OID: 3300021961
• Scaffold ID: Ga0222714_10039284
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_3D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3406
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (50.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 38.0516
  • Long. (^o): -121.88
  • Depth (m): 13

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002317	Metagenome / Metatranscriptome	571	Y
F003661	Metagenome / Metatranscriptome	474	Y
F007971	Metagenome / Metatranscriptome	341	Y
F022402	Metagenome / Metatranscriptome	214	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0222714_100392844	F007971	GAG	MAVKSKTALGRVEHKAGKPKRTSIGMGQHSRPRNRKKLRGQGKG
Ga0222714_100392845	F022402	AGG	MPTWLWRSIVGISATITIVAAGQWASCRFMVLPRIWPWYAAYIGTPQGKSIDPTPMGCNDVDARTITVMMSVLTTLISLSRKAE
Ga0222714_100392846	F002317	N/A	MESHDEVQTQAPPLGVASPWNQAIPALLVAAVLGLGGLFMQVAKLDQSVSTVAQDIQELKNDSKERLADLEDRVRQIEMTIGRQR
Ga0222714_100392847	F003661	N/A	MDPTTTAIVAIVIAAGSEIITLLPIKENSWVQLIMKVLKMVFPKR