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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300021961 Open in IMG/M |
| Scaffold ID | Ga0222714_10037726 Open in IMG/M |
| Source Dataset Name | Estuarine water microbial communities from San Francisco Bay, California, United States - C33_3D |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 3495 |
| Total Scaffold Genes | 12 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (33.33%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (25.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales → Aphanizomenonaceae → Aphanizomenon → Aphanizomenon flos-aquae → Aphanizomenon flos-aquae WA102 | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: California | |||||||
| Coordinates | Lat. (o) | 38.0516 | Long. (o) | -121.88 | Alt. (m) | Depth (m) | 13 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000957 | Metagenome / Metatranscriptome | 821 | Y |
| F003583 | Metagenome / Metatranscriptome | 478 | Y |
| F003714 | Metagenome / Metatranscriptome | 472 | Y |
| F006659 | Metagenome / Metatranscriptome | 367 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0222714_1003772611 | F003583 | N/A | MGKQKPSLPSGSDNLLLAVALITGFAGVSAFSSAYIAGYVLDQLQSTDALVMIVTDAGLKSDSADLERNMSTATLALRSVRDLGWALAVGCLGVGVAVFLRSRRQNA |
| Ga0222714_100377262 | F006659 | N/A | MKKDSKPSPEYRIIADSSYIVLPDQKVARLLTPTVRNGVTYYNLFVPGYTRMSLADIEATIKAGEVTKATDQPK |
| Ga0222714_100377266 | F000957 | GGAGG | MSSFKHLDGMVALLSEIYHINERIMTGDICSAKTAIESKRMEKLLNHYHESLSEDGASKISLQAYAAAGGWVGITYSYEVDGFEVAGSQVPRRV |
| Ga0222714_100377269 | F003714 | N/A | MPNANHPYVDSLTFAGRPLPLKRPMAEFAARRLQAILPQIAALNAAGKSQADAAAALDTTVCTLRQWLDITGTTWVNLKKRGPYNRQK |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |