Scaffold Ga0222714_10037066

Overview

Basic Information

• Taxon OID: 3300021961
• Scaffold ID: Ga0222714_10037066
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_3D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3538
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 38.0516
  • Long. (^o): -121.88
  • Depth (m): 13

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001424	Metagenome / Metatranscriptome	698	Y
F003662	Metagenome / Metatranscriptome	474	Y
F021490	Metagenome / Metatranscriptome	218	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0222714_100370662	F021490	N/A	MLDQPDHGSELKASGDEMTDLLTALHLSVVMLDLKIRMMEAINEDRFDLAMTYHLLILVRQDELDAHKWAMSPKAWAIYETIHP
Ga0222714_100370663	F003662	GGAG	MKSKQATVVLKGQEWIVLDTDEAQDKKVFCKLMSLDGTIVWHTWVDINQIVGII
Ga0222714_100370666	F001424	AGGA	MHRLSTIDEMVEDERVFCHQCANAEIVEQRQSMPAEQMERHRKVNAKPLQWMFDQAKIKGGWATVTWSEHQCAKTGLAAFPTDVKHRCHLFQTKPSAVESEEWWLT