NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222714_10031933

Scaffold Ga0222714_10031933


Overview

Basic Information
Taxon OID3300021961 Open in IMG/M
Scaffold IDGa0222714_10031933 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_3D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3900
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (30.77%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)38.0516Long. (o)-121.88Alt. (m)Depth (m)13
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F017988Metagenome / Metatranscriptome237Y
F020142Metagenome / Metatranscriptome225Y
F043294Metagenome / Metatranscriptome156Y
F096917Metagenome / Metatranscriptome104Y

Sequences

Protein IDFamilyRBSSequence
Ga0222714_1003193311F043294N/AMATAIAATSLVLALVMGFLLYLEIHKMEKQILEIQEQIHHMHNEVSKLKQQAKKKYYANAAKKQVIQG
Ga0222714_100319333F020142N/AMRKGPQRIKIPSKKWNEKFIQGKKTWHVVHKQDGITYAVAELRPGVVGGAVERFYI
Ga0222714_100319336F017988N/AMKFLELTGFGNKYKHLISLRSIADISFEPTYTHISLNNGSGVNVIENEKEITDMIRYQNGDIVGVEYLENLQAQIDAYYEMEADRFAVGGDDELPF
Ga0222714_100319338F096917GGAMKITMMKDIPNKRRSTEEGHMANLIRRKMISKNHGDKKKFNRSELKREDRKGPHYIIV

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