Basic Information | |
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Taxon OID | 3300021961 Open in IMG/M |
Scaffold ID | Ga0222714_10031933 Open in IMG/M |
Source Dataset Name | Estuarine water microbial communities from San Francisco Bay, California, United States - C33_3D |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 3900 |
Total Scaffold Genes | 13 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (30.77%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (25.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: California | |||||||
Coordinates | Lat. (o) | 38.0516 | Long. (o) | -121.88 | Alt. (m) | Depth (m) | 13 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F017988 | Metagenome / Metatranscriptome | 237 | Y |
F020142 | Metagenome / Metatranscriptome | 225 | Y |
F043294 | Metagenome / Metatranscriptome | 156 | Y |
F096917 | Metagenome / Metatranscriptome | 104 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0222714_1003193311 | F043294 | N/A | MATAIAATSLVLALVMGFLLYLEIHKMEKQILEIQEQIHHMHNEVSKLKQQAKKKYYANAAKKQVIQG |
Ga0222714_100319333 | F020142 | N/A | MRKGPQRIKIPSKKWNEKFIQGKKTWHVVHKQDGITYAVAELRPGVVGGAVERFYI |
Ga0222714_100319336 | F017988 | N/A | MKFLELTGFGNKYKHLISLRSIADISFEPTYTHISLNNGSGVNVIENEKEITDMIRYQNGDIVGVEYLENLQAQIDAYYEMEADRFAVGGDDELPF |
Ga0222714_100319338 | F096917 | GGA | MKITMMKDIPNKRRSTEEGHMANLIRRKMISKNHGDKKKFNRSELKREDRKGPHYIIV |
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