Scaffold Ga0222714_10031933

Overview

Basic Information

• Taxon OID: 3300021961
• Scaffold ID: Ga0222714_10031933
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_3D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3900
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (30.77%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 38.0516
  • Long. (^o): -121.88
  • Depth (m): 13

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017988	Metagenome / Metatranscriptome	237	Y
F020142	Metagenome / Metatranscriptome	225	Y
F043294	Metagenome / Metatranscriptome	156	Y
F096917	Metagenome / Metatranscriptome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0222714_1003193311	F043294	N/A	MATAIAATSLVLALVMGFLLYLEIHKMEKQILEIQEQIHHMHNEVSKLKQQAKKKYYANAAKKQVIQG
Ga0222714_100319333	F020142	N/A	MRKGPQRIKIPSKKWNEKFIQGKKTWHVVHKQDGITYAVAELRPGVVGGAVERFYI
Ga0222714_100319336	F017988	N/A	MKFLELTGFGNKYKHLISLRSIADISFEPTYTHISLNNGSGVNVIENEKEITDMIRYQNGDIVGVEYLENLQAQIDAYYEMEADRFAVGGDDELPF
Ga0222714_100319338	F096917	GGA	MKITMMKDIPNKRRSTEEGHMANLIRRKMISKNHGDKKKFNRSELKREDRKGPHYIIV