Scaffold Ga0222714_10028980

Overview

Basic Information

• Taxon OID: 3300021961
• Scaffold ID: Ga0222714_10028980
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_3D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4157
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (77.78%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 38.0516
  • Long. (^o): -121.88
  • Depth (m): 13

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000376	Metagenome / Metatranscriptome	1216	Y
F002622	Metagenome / Metatranscriptome	542	Y
F078287	Metagenome / Metatranscriptome	116	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0222714_100289805	F078287	AGGAG	MPYNIKQNVAGCKGWAVVNDKGELKGCHPSKTRASAHQRALYAATANEEKAKEQKRIL
Ga0222714_100289806	F002622	AGGAG	MQEPDESDEKLAYYLEVGAVSLEGMDENGEMIYSITELAKEIAPELWQSHIEYVDRSLMELYEQGLVELEYNENLEATLHLTEEGHRVAKEKGLVEMDFNRDIPND
Ga0222714_100289808	F000376	GGA	MSIYQEKAKECKCCGKHVPLPTTLKEYGGIMLCPTSFANVIEYKRLWKSLGSRPAGNIRKHFSEYVQQIVETTIDKNEDGTLQ