Scaffold Ga0222714_10027079

Overview

Basic Information

• Taxon OID: 3300021961
• Scaffold ID: Ga0222714_10027079
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_3D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4338
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (23.08%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (16.67%)
• Associated Families: 6

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 38.0516
  • Long. (^o): -121.88
  • Depth (m): 13

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002317	Metagenome / Metatranscriptome	571	Y
F003661	Metagenome / Metatranscriptome	474	Y
F003805	Metagenome / Metatranscriptome	467	Y
F004722	Metagenome	426	Y
F006109	Metagenome	381	Y
F017824	Metagenome	238	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0222714_1002707911	F002317	N/A	MEHHEEAFIAAKPPDNPFNQAVPALLTAAVVGLGGLFMQVAKLDQSVNTVAADIQELKNDSKERLSDLETRVRQIEMTIGRQK
Ga0222714_100270792	F004722	GGA	MSRTGRELVLAWLYREIRAAKTADLQRAAAFLEWARGIRKGCAKQRGGARVAQANAWRKNVDGDVRW
Ga0222714_100270794	F006109	N/A	MTRYAVMAGNWWVTAIFGSEGLGVTRTKEDASSWPTYEQALVAAQAVAERTHSFVAVHSIDEPAYSGK
Ga0222714_100270795	F017824	N/A	MNPLQWDLDRDRKLGEGVSRTSSERAKLFELQVWLPGQGAMRDLIRAESLQQAIEFAGNRYPNCRIEVPPQAAKKPKLARSKTSPSVAAKSRKKLADKK
Ga0222714_100270797	F003805	N/A	MRPIEHTPESCFHKAAQDRWLVDLFNKQDYRGLLEAALVLNTLHQLERTKANWAIREAADNLADQFGLDRDSA
Ga0222714_100270799	F003661	N/A	MDPTTAAVIAIVIAAGSEIITLLPIKENSWVQLIVKALKIIFPKR