Scaffold Ga0222714_10022397

Overview

Basic Information

• Taxon OID: 3300021961
• Scaffold ID: Ga0222714_10022397
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_3D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4897
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 38.0516
  • Long. (^o): -121.88
  • Depth (m): 13

Associated Families

Family	Category	Number of Sequences	3D Structure?
F027496	Metagenome / Metatranscriptome	194	N
F039106	Metagenome / Metatranscriptome	164	N
F099211	Metagenome / Metatranscriptome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0222714_100223975	F099211	AGTAGG	MKGLFEMYPDDDFLPDEAFDEITKGEYEDMQEDHNIADVLNRFVRLCQEYGFYFMMRQLTKALNAKGFNV
Ga0222714_100223977	F027496	GAGG	MTKEMLDELLYLIELQIKANISLALGHADAADKEAEREHVQYYRLVSLLDSMKDDLK
Ga0222714_100223979	F039106	AGGA	MIQLYFNGKPCEIVSRDSTDGTVCIRYAADHPNWPFPNYTWVNPSVLSKLRQSKHAKRLEALQGIEDALM