Scaffold Ga0222714_10021937

Overview

Basic Information

• Taxon OID: 3300021961
• Scaffold ID: Ga0222714_10021937
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_3D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4959
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (16.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 38.0516
  • Long. (^o): -121.88
  • Depth (m): 13

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019614	Metagenome / Metatranscriptome	228	N
F040616	Metagenome / Metatranscriptome	161	N
F085603	Metagenome / Metatranscriptome	111	N
F097200	Metagenome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0222714_100219371	F040616	N/A	MDPEDIAYEDSVSSDTAGWPGDGSGEDDFQDYNQNEAGDYYNE
Ga0222714_100219372	F085603	N/A	MKVQIEFNTDNAAFEDSFLMEVTRTLQQCKSALLDSERGTITIRHILKDSNGNRIGVVNIGNN
Ga0222714_100219373	F019614	GAGG	MYSIYTMNVASIASNKIQVEYSAMPGDNREFLTFKVPNGWDDVKRLTNKVLTHNNKDFTFSGWNSDRNECYFVRLVNGPSFVASIR
Ga0222714_100219378	F097200	N/A	MTSQLASEKKLQGHNREQLFKTLYEANHLGCVVEVIKSRRKPDVCIKRNGVVVHNISVKSADKVIQWELKSYNKLLSLYGNDHLIMEFMNIRTKNDKPTQKQLFVDYFPRITAYLSDKQNFKQFITKHFTNNNEVDLLAVGNGISYNIYNFQQVLDYMTDNYVVRNSEQQIQINTTDGYLMFSIEIRSDKQCMLIRQDLASLQRVLKHITPVDKLPPVX