Scaffold Ga0222714_10016432

Overview

Basic Information

• Taxon OID: 3300021961
• Scaffold ID: Ga0222714_10016432
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_3D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5978
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (85.71%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Associated Families: 7

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 38.0516
  • Long. (^o): -121.88
  • Depth (m): 13

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003378	Metagenome / Metatranscriptome	490	Y
F005528	Metagenome	397	Y
F006986	Metagenome	360	Y
F020354	Metagenome	224	Y
F021759	Metagenome	217	N
F025023	Metagenome / Metatranscriptome	203	N
F040082	Metagenome	162	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0222714_100164321	F020354	N/A	PAQKRNKVIAKLRDELFALGFTLGASAITIMTLSGSLQNWALFFTFLSLALHLAGVLTKDGEDHGDRSEDQ
Ga0222714_1001643210	F025023	AGG	MTDTFEGRTYDTGVDRTCVLQLQSDFDSLRPHQRAMLKKIATECTEYGHSISLDQLKSHRRYQIGRGLVDLIMSDNCDELLITSLCHSIQGVLFKTAGGAIGHLDAACAEQFAVMCRAIRWDDQDIVWNISTDSFGFPSKEKVGK
Ga0222714_1001643213	F040082	AGGAG	MTGDTFAMSQEIIELQTRVSELMVALERVTEQRDNAVDAAESLHEELEACRDRIKSLGGQLDRLRIHLQQGIEL
Ga0222714_100164322	F003378	GGAG	MVTEVKINKQNPTIAKFLDLGQRLVSLFLANALPAITTGAVIGISVGKAAIMAGAMAVIKVVSALAEASVDGELDSEEIKQAFSGAKKK
Ga0222714_100164324	F021759	AGAAGG	MDAGYATVLAAAVATLGGIIIALVQLKGFRDENRADHAVVQKRLDNLIDMVGKQGARLTSHLDWHVTKEPSGSLTKTKQVATRKKK
Ga0222714_100164325	F006986	N/A	VTVVLVTWHDAHSGAESWINIKDLDTDPAEVESVGFLLATGDGGKPDHVTLYQSRNEDSVDHVLHIPVGMVKAIKVLMDLEIKI
Ga0222714_100164326	F005528	AGGA	MRILTAILATLTSLTISLGIAQAVSAPTHSSVAVIALQPLWQADRLDPIQPIRYRHGDTSWLPSLAKQAGWPDHAIPKLTQIVLRESGGCPNRRGGDMVDKDCNITGVSEWNHRSDTGLLQINGVNYDQSRNKWAAVCRELKICTQDPLLDPLTNLKAGLVLYRISGFEPWNPCNWRVCKASTTSVP