NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222714_10015687

Scaffold Ga0222714_10015687


Overview

Basic Information
Taxon OID3300021961 Open in IMG/M
Scaffold IDGa0222714_10015687 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_3D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6154
Total Scaffold Genes21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (19.05%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)38.0516Long. (o)-121.88Alt. (m)Depth (m)13
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015704Metagenome / Metatranscriptome252Y
F015864Metagenome / Metatranscriptome251Y
F027748Metagenome / Metatranscriptome193Y

Sequences

Protein IDFamilyRBSSequence
Ga0222714_1001568711F027748N/AMTTATRLTASEARCAIYDLADLYSWETVAREMICNMSGDQAREFVEDFQRLYAD
Ga0222714_100156872F015704N/AMTFSEILWNATNPENGTIRWSTACQAAKEHGLWDDFRTDYGTTASFGGVDTGEFLEWLGY
Ga0222714_1001568720F015864N/AMTDLRYSTGTELEEFLYEKCRQDPDLLATIINEYVCSLSDSKLIELEDFLTNNFGDD

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