Scaffold Ga0222714

Basic Information
Taxon OID	3300021961 Open in IMG/M
Scaffold ID	Ga0222714_10015412 Open in IMG/M
Source Dataset Name	Estuarine water microbial communities from San Francisco Bay, California, United States - C33_3D
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300021961 Open in IMG/M

Scaffold ID

Ga0222714_10015412 Open in IMG/M

Source Dataset Name

Estuarine water microbial communities from San Francisco Bay, California, United States - C33_3D

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	6216
Total Scaffold Genes	18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	13 (72.22%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (85.71%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

6216

Total Scaffold Genes

18 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

13 (72.22%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (85.71%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location Name	USA: California
Coordinates	Lat. (^o)	38.0516	Long. (^o)	-121.88	Alt. (m)	Depth (m)	13
Location on Map

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Source Dataset Sampling Location

Location Name

USA: California

Coordinates

Lat. (^o)

38.0516

Long. (^o)

-121.88

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003750	Metagenome / Metatranscriptome	470	Y
F004476	Metagenome / Metatranscriptome	436	Y
F004583	Metagenome / Metatranscriptome	432	Y
F056602	Metagenome	137	N
F057375	Metagenome	136	N
F059958	Metagenome	133	N
F074878	Metagenome / Metatranscriptome	119	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0222714_1001541210	F059958	AGGAG	MDKNNSFTTLEAINKLVAFNQLYNKIVTKTTEAKNALTQAEWSLEDAKFEIIRNVDIKELGSNAEQREAKLSGLLAEHVKSVRTATLTYELAKAEEQKCRANLDFAKHLVRASELLAEG
Ga0222714_1001541212	F004583	AGGAG	MKSTRNSDRLREILVSTRHQIVALKDIQIDLLRHDGKVANQIATQISALEEVYKHQLSLVDLAENLEPKRSGWFSGQIKSKEDRLANIMD
Ga0222714_1001541216	F004476	AGAAGG	MLFSRNGFKSVDTTEAFVKEALQFGNKDVVLSLTHETGVIDIVFSPTMDAIEAEIYHFLNDGTELKYSMPIKSLTNNIMSTLQMTSAIYAYMSEAYKVADMFRSTTRQSTDYAN
Ga0222714_1001541217	F003750	GGAGG	MTLDMVNRLLYLVVWGGGIVAFWQITKHMPKALYTLLECISVMACTVLLLTPVSMIIEYILSGNIHTTMMFAGVLCSVGLLSGIWMVMVQSSRALQGKKEYQYVVL
Ga0222714_100154124	F074878	N/A	MPYYIAMNTTDKVIVKFRSRSPRLLFSAYYNGILLASGNNAQDLGEDYARKYGTEWILQDGNKFYTQGGVK
Ga0222714_100154126	F056602	AGGA	MSNWTKGFIGVAIASQVILFVILFGCKTGDAFYISGTDLFGIIMSSVCTLVYIPAILVSNHSDNIRKKLDEQLQA
Ga0222714_100154129	F057375	GAGG	MGETVYFVNASDLFSAIELGDCEQTEFLDQFTYGDNLTDLTLVKKQTFVNRLVEFIRDCEDIYEKDVVMQNLKEYNFGLLDCIKHVNIEG

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0222714_10015412

Overview

Ecosystem & Geography

Associated Families

Sequences