Scaffold Ga0222714_10014671

Overview

Basic Information

• Taxon OID: 3300021961
• Scaffold ID: Ga0222714_10014671
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_3D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6413
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (25.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 38.0516
  • Long. (^o): -121.88
  • Depth (m): 13

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009604	Metagenome / Metatranscriptome	315	Y
F010397	Metagenome / Metatranscriptome	304	Y
F010913	Metagenome / Metatranscriptome	297	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0222714_1001467114	F010397	AGGAG	MNINEFERTKPVVTMQKINELIKLIDDERVKTEILYKDRVRSLDDISILLKDIKKSFTKG
Ga0222714_100146715	F010913	N/A	MICFIKKFFKTDYNKNLNNECCDKELLKSVLNEVKVQNERLNEIMSALVNLQDAISRLSHATDKAVTVLNTPHPTEEALQAAADLVNAQAARLEAASDSDPTTVAE
Ga0222714_100146719	F009604	N/A	MNQCGCGNEIHPERFELGYKVCLSCGDKAAQKNKKYGYMHFGHKTAGSIVVTSKKAVDNYIKVSKRMNKGSNMGYASRLSTSF