NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222714_10014652

Scaffold Ga0222714_10014652


Overview

Basic Information
Taxon OID3300021961 Open in IMG/M
Scaffold IDGa0222714_10014652 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_3D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6418
Total Scaffold Genes19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (15.79%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)38.0516Long. (o)-121.88Alt. (m)Depth (m)13
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004723Metagenome / Metatranscriptome426Y
F018713Metagenome233N
F024743Metagenome / Metatranscriptome204N
F047570Metagenome / Metatranscriptome149N

Sequences

Protein IDFamilyRBSSequence
Ga0222714_1001465210F018713N/AMNPDPNLWAEIPQEVKDAALLLGNYFKKQGIDSWTLYDVSSRQNFNGAYNQGLDTAISLVSECSDMETVICGLENSKKQFSNKGGDGIDYTNSF
Ga0222714_100146526F004723AGTAGMKKGDKFIHTDILGKKHEVTYTGTRRIVKDCEFEFFVDDKGDSCFFTDTEVKKMEKKD
Ga0222714_100146527F047570N/AMTDENKLKIVTLSHNIKAVCHILDKKVFSVYCVTSGTFTEIDSLFELVKELKEMNKEE
Ga0222714_100146529F024743N/AMNEVALSNLYSHASGAYNEAKDAQDLIIMMNVLHLRLEHNMAYHKIAKRCGIKVNKVKLILFNYESRS

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