Scaffold Ga0222714

Basic Information
Taxon OID	3300021961 Open in IMG/M
Scaffold ID	Ga0222714_10014219 Open in IMG/M
Source Dataset Name	Estuarine water microbial communities from San Francisco Bay, California, United States - C33_3D
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300021961 Open in IMG/M

Scaffold ID

Ga0222714_10014219 Open in IMG/M

Source Dataset Name

Estuarine water microbial communities from San Francisco Bay, California, United States - C33_3D

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	6558
Total Scaffold Genes	13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (30.77%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (60.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

6558

Total Scaffold Genes

13 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

4 (30.77%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (60.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Eukaryota	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Eukaryota

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location Name	USA: California
Coordinates	Lat. (^o)	38.0516	Long. (^o)	-121.88	Alt. (m)	Depth (m)	13
Location on Map

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Source Dataset Sampling Location

Location Name

USA: California

Coordinates

Lat. (^o)

38.0516

Long. (^o)

-121.88

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008548	Metagenome / Metatranscriptome	331	N
F015588	Metagenome / Metatranscriptome	253	N
F027498	Metagenome / Metatranscriptome	194	N
F027780	Metagenome / Metatranscriptome	193	N
F030743	Metagenome / Metatranscriptome	184	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0222714_1001421910	F030743	N/A	MNVNNNINVNNLIERFKKLSLKKDGPWIVASQHSSLRRDGQLRQSYRYFENKPVSTAALYAEERVRLDVATERYKLGKQEKLEDDVILSVSHGRQMLVKRYFTVPEDTIVILLTYPDHLLYASANWRNFLNPLYTRKGLDELFTGGKLERTLVFNREKIDHVQVDIRIPGDLCENLELFYQDPERFPHLGIFELPFKKIRFGGIADFVVTKGNDDWPGNNYTQLNAAKKTLNELVKFYKGKIIIVNSCREKNEPMSV
Ga0222714_100142192	F027498	AGG	MPSKGDIKPVEGSTDYLEFNGKRWHRFNESGKDAGVGVWGVTDEVGSPATRWFLRPRARRFN
Ga0222714_100142194	F027780	N/A	MLSLWAVPIGARTFQKKYNAKQIPHVTLLENLKPEKRAHEFFPTTMNLKAQSTEMVVRKMKDKYQYGWVFAYEGGDLFMTCHEVNKDEISAMDIRKLEEKEINTVVTYSIDGVLVDPSDLDTAWAYESDENWL
Ga0222714_100142195	F008548	AGG	MDILPLDLQCDILKRATLLDLNERVTSFKPKYKVGFTFGINARITLEWDNDLVESDPWEFLDMIRHYYDKSIEDYEDHIFKMVDEEKKNHEYHVGLEGELFSRFYQENEHMLTFKFFVKSGETFLDHQDLEFFKSMEPHLDKGYTMYQLVMLTQFLRDIYPIEFLEKYNESVMREEGFDETEW
Ga0222714_100142196	F015588	AGG	MNTLPSDLVHNIYTKACLMEMEEKFPPNYRFYTDHSEIDFSANDLAIRKDRVIANISDYIYNHIFTSMRLPILHFEKKIGPKVVYSQNVHLWNDEIIERYTGKIPKSPLESYLWNMMMLI

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0222714_10014219

Overview

Ecosystem & Geography

Associated Families

Sequences