Scaffold Ga0222714

Basic Information
Taxon OID	3300021961 Open in IMG/M
Scaffold ID	Ga0222714_10012808 Open in IMG/M
Source Dataset Name	Estuarine water microbial communities from San Francisco Bay, California, United States - C33_3D
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300021961 Open in IMG/M

Scaffold ID

Ga0222714_10012808 Open in IMG/M

Source Dataset Name

Estuarine water microbial communities from San Francisco Bay, California, United States - C33_3D

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	7005
Total Scaffold Genes	13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	7 (53.85%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (66.67%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

7005

Total Scaffold Genes

13 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

7 (53.85%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (66.67%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location Name	USA: California
Coordinates	Lat. (^o)	38.0516	Long. (^o)	-121.88	Alt. (m)	Depth (m)	13
Location on Map

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Source Dataset Sampling Location

Location Name

USA: California

Coordinates

Lat. (^o)

38.0516

Long. (^o)

-121.88

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003378	Metagenome / Metatranscriptome	490	Y
F005528	Metagenome	397	Y
F006986	Metagenome	360	Y
F021759	Metagenome	217	N
F041650	Metagenome	159	N
F091376	Metagenome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0222714_1001280810	F041650	GGAG	MREDIQLSLAECQMPRTRYQLEHFVIGAHDTPEMQFVQVCRELEALHYTIKEVAMQVRKTEYEIEDLRDKGDRISQVEADIKELGLERTRLVAIGACREYDTLIEMYDQMPHFTREQIDASQPDYWQARLGRQANLQGMTGSPNWAHLEALDQIGVLQPMIEAQQAKAKEIQQ
Ga0222714_100128083	F005528	N/A	MRHSCTYERTTMRILTAILATLTSLTISLGIAQAASAPNRPSVAINALQPLWEPASTDRLDPIQPIRFRHGDVSWLPSLAKQAGWPDHAIPQLTELVLRESGGCPNRRGGDMIDKNCNIRGVSEWNHRSDTGLLQINGVNYDPSRNKWAAICREMNICTQDPLLDPLTNLKAGLVLYRISGFEPWNPCNWRVCKASTTSMP
Ga0222714_100128084	F006986	N/A	VTAVLVIWHDAHSGSESWVSIKDLDSEPAVVHTVGFLLATSDGGKPDHVTIYQSRNEDNIDHVLHIPVKMVVSVKVLMDLEINSQDR
Ga0222714_100128085	F021759	AGAAGG	MDAGLATVLAAAVATFGAIIIAIMQLKGFREENRADHAVVQKRLDTVIDMVAKQGAKLTSHLDWHLSKEPSKDQKVKQVATRKNK
Ga0222714_100128087	F003378	AGGAG	MDKEMNIKQNATVAKFLDLGQRLVSLFLANALPAITTGAVIGISVGKAAIMAGAMAVIKVVSALAEASVDGELSSEEIKEAFSGAKKKK
Ga0222714_100128089	F091376	AGGAG	MKYATWTISRPEGTTPEPLIRSRGGQALGGTMLDTETVLGYVWAEDLTGTDMWNLTIKTQAQALTLAQALNPECFVGDDGTIQAPFPDNI

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0222714_10012808

Overview

Ecosystem & Geography

Associated Families

Sequences