NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222714_10011226

Scaffold Ga0222714_10011226


Overview

Basic Information
Taxon OID3300021961 Open in IMG/M
Scaffold IDGa0222714_10011226 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_3D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7656
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (25.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)38.0516Long. (o)-121.88Alt. (m)Depth (m)13
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005633Metagenome / Metatranscriptome394Y
F007260Metagenome / Metatranscriptome354N
F010835Metagenome / Metatranscriptome298N
F017997Metagenome / Metatranscriptome237Y
F023575Metagenome / Metatranscriptome209Y

Sequences

Protein IDFamilyRBSSequence
Ga0222714_1001122615F005633N/AMRIATTIAVDKTGKTKLVSGPEVSADLQRTNFNTASVPEGGKLVLWIQGALAPKVRKG
Ga0222714_100112263F023575N/AMAVSKGLALVYGAKGTITLYTPAGVALTTGAISTIESYDATHEADVEQIKNGAGETVAQVSANERISLNVTFIPSAASFAQAKLAAGLPAVNGYATIASSDGVTIGGGSIDGNYVYAGGGSVKFTSSGKVMVTVTLTKYLDATALTGNASTFTL
Ga0222714_100112264F010835GGAGMNAVALRTERALADWLAAQDWSESPLGTPACLTSYGHGAFADADLEDRMPDFPRIVVRASTAVPVHPLDRTCELDVSAVLQLSADDTSEVHLLAVVQIFENLLQYLYVDGNISELNTDDTDPSGGFNAQFVIPTDFGINDTSERARTYTRSMTIFAAANAI
Ga0222714_100112266F007260N/AVNLIATSLQLGMSVLQSAMGNPSFLWQGVLVRCLPAAITDTNSVISGGFQDNVQVRLLVKLADWRLVDSTLVTVDASVWSCDVGSNADRLLQENGSLILQENTDRLLLTFGKMIPVVGRLVTYDGRQLRIMSARRDGSGAYYVLDLGAKTK
Ga0222714_100112268F017997N/AVNIIEQIVTALLKWLTGLAKNPPTVEDAKPDKELKAKLLDRIDRAGG
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Institute for Fundamental Biomedical Research
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