Scaffold Ga0222714_10010857

Overview

Basic Information

• Taxon OID: 3300021961
• Scaffold ID: Ga0222714_10010857
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_3D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7828
• Total Scaffold Genes: 24
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (8.33%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (25.00%)
• Associated Families: 8

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 38.0516
  • Long. (^o): -121.88
  • Depth (m): 13

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012774	Metagenome / Metatranscriptome	277	Y
F012978	Metagenome / Metatranscriptome	275	Y
F013085	Metagenome	274	Y
F015599	Metagenome / Metatranscriptome	253	Y
F018924	Metagenome	232	N
F021108	Metagenome	220	Y
F028510	Metagenome	191	Y
F088871	Metagenome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0222714_100108571	F012774	GGA	MKTEPIILHIELGNQSVLEWLKENQYIIFSELIRYSDKLLKENLNFIQAIMVSNVSDNIVFIVKKENLKLTLDKAMDFFMDIEEYEKCAEIRDLYILIENLKNETKDIKISKSNQRGLKS
Ga0222714_1001085710	F021108	N/A	MAKAVTQMNEFRKLEDGRIVLDGLVWSNNADKAIEVTDPDNGFKVLNIKLDGVAYYPVGFDKRKKK
Ga0222714_1001085718	F028510	N/A	MGNVFKQRTYQCKCGGLTKEYVWDNELEKTKVKCNDCSKLLNHSNLVKVNQAVSIRTPTKNR
Ga0222714_1001085721	F015599	GGTGG	MKLTIRNYEFLFRQQWDDKNYIEEIVEKGHAYEISVWRGHMRHIIILDRKPVENGYYIIGKWSNEAHCVRYPYWIKRDDIMNMKSLMDKLKLMTDDWSPKLL
Ga0222714_1001085723	F018924	N/A	MTNSEKAIAQLFGVLCSVVKSEHTPQATKQATISTFQHLIGEEGSPFLDEELIQLSIAMDNEMQSIVRQLNGDRILNNVLTNNINLN
Ga0222714_1001085724	F088871	N/A	KQGMERKNLQLNDTNVMIARTLGSMGYSLADGVKHTKESRPSSPLMAIRELQYQTQMKDPKFQRKEMKRKYMSKGYHLQKGDWGYITQSLLDYAYLCNKVTFTQLKQHYDITLRGNTTIQKGGSFIHHLHSLIDTRNAIGRRCGRYLYKDTDGKYKVSNI
Ga0222714_100108575	F012978	N/A	MKMKMKFNKTDDELKHMSDDELFEYLDAKAAHLKKHTSPLSSYKTKKFASISAAISNTEFDYDSVKKIAEENDRMATEKFIKNKYKK
Ga0222714_100108576	F013085	N/A	MDILNEIIEASNHMLDALEQTDFFAEAPFIDRIPLKRALQIAMQRKWEQEADMFLDDKEFLEVCKSVSENEIGKTIGDLVDKGALNMSINEDGEILYSANKDFQFEDYEDEDEIQ