Scaffold Ga0222714_10010622

Overview

Basic Information

• Taxon OID: 3300021961
• Scaffold ID: Ga0222714_10010622
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_3D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7928
• Total Scaffold Genes: 25
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (20.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 38.0516
  • Long. (^o): -121.88
  • Depth (m): 13

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004723	Metagenome / Metatranscriptome	426	Y
F024743	Metagenome / Metatranscriptome	204	N
F034921	Metagenome / Metatranscriptome	173	Y
F043930	Metagenome	155	N
F046324	Metagenome / Metatranscriptome	151	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0222714_1001062210	F034921	N/A	MSYIGVPEQYQVNFHNQVSEAQKGFSDYLCPTTKESYWATVDYYWPEIKKIVLMFTFEDSDGLDKMLKERDPSIVSTFNDAWFNAPDNGRIHLISAWHIFCDLCSEGYLLHEN
Ga0222714_1001062217	F024743	N/A	MDVVTLSNLYSHASGAYNEAKDAQDLIIMMNVLHLRLEHNMAYHKIAKRCGIKVNKVKLILFNYQNEK
Ga0222714_1001062219	F004723	AGTAG	MKKGDKFIHTDIIGKKYELTYTGTRREVKGCEFEFFADDKGKVCFFTDSEVKKMEKKD
Ga0222714_1001062223	F046324	N/A	MFCSKTKTKAKLEECAVPWSGDTISVCNKCRMSIWDFDFDDFHSQENISE
Ga0222714_100106229	F043930	N/A	LPCGSAPARLPKMNRLEKARWRNILRKAAKANRLLKKGYLVFDHYGNRFDGFKFANGELYQGSKNFKIVWASKDGRWGSALNTSIKKYNSDRFNKWTSVHPKYIKKI