Scaffold Ga0222714_10010220

Overview

Basic Information

• Taxon OID: 3300021961
• Scaffold ID: Ga0222714_10010220
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_3D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8124
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (4.55%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (11.11%)
• Associated Families: 9

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 38.0516
  • Long. (^o): -121.88
  • Depth (m): 13

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000785	Metagenome / Metatranscriptome	891	Y
F003291	Metagenome / Metatranscriptome	495	Y
F010683	Metagenome	300	Y
F010916	Metagenome / Metatranscriptome	297	Y
F017129	Metagenome / Metatranscriptome	242	Y
F027513	Metagenome / Metatranscriptome	194	N
F029999	Metagenome / Metatranscriptome	186	Y
F042337	Metagenome	158	Y
F093862	Metagenome	106	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0222714_1001022011	F029999	N/A	MLGGMVKPPYLYYVINDKNMYNENPFKSFSASKMSNNPRFNVSVEYTDFMGRIHRIQCKTRKSMLEAQSFLKMFKSESVKINSILREYPVSMGKFPKKFHKEIKSDLQSAGFGTISKYLL
Ga0222714_1001022015	F010683	N/A	MNKKVKTKSASKKATAMNIIKHKRVVLECVGTESLPDMVFISAAPAWAKSLVGKRYVSLDRAKATIEALDAEKLISKGAKSLIKEMDAAGIIPLDIDSI
Ga0222714_100102202	F042337	AGG	MELVIEGLDKLIFRTYHERKIGNIRIDKRNGARAASYVFTFPSIDVALEGWNRELEVYLCKFPEGSGRYELFVMGLHGVTCHYLELDEIKDMNSFHNSMISTMFKAKQYWLSV
Ga0222714_1001022021	F027513	N/A	MGKNSGVKPGEQVASNRALHNDMQLVENPNGEYDAVVFHVDRYTLIRGEYYPIGRNFHYPKIWGRKYAATKLIEDIMADKKRGIQEAEMELIKLQKCLDKVNLWSDTDL
Ga0222714_1001022022	F000785	N/A	MRVTNKRGMKFDCTRLMKWAEDKLGKSRCTAIAFTWDPTEESCGWYNWDETIWINLASCKRMITVQKTILHEWTHAQQRFRWYNHYNVKYGYKNNPYELQARENEKLVKRAYKKQK
Ga0222714_100102203	F017129	N/A	MNTTYNTYNDVQAFESLERRRAEIALDPQYQQWVAELNVSRSYVDPEGTIKANYLNDQYSFSTSEPKSSILNFLKLKGIWS
Ga0222714_100102207	F010916	N/A	MSISKQIHADLLDMVSKHDYSYMMSDSHSVWESGMVYEKHIKAKIHALCAIHKEDAEALYNEVKAVAGPDYTDYDKNGYGLKYRVINQWFEVYIGLDTISS
Ga0222714_100102208	F093862	N/A	MNIMTVKFESELQIKALTKLLSAVYETPVRPRGRHSDRKSVLGGKWRKWSQNDIPWRMAERVTFYKVNK
Ga0222714_100102209	F003291	N/A	MNTKQINEKLVSVFTQDELSALMTAVAGYVNVKRKQGRSTGIECVVFNKVCDALLLSNELNAVVIDSKPNPNAPMGSASYKAYEAMYDSDVRAHS