Scaffold Ga0222714

Basic Information
Taxon OID	3300021961 Open in IMG/M
Scaffold ID	Ga0222714_10010073 Open in IMG/M
Source Dataset Name	Estuarine water microbial communities from San Francisco Bay, California, United States - C33_3D
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300021961 Open in IMG/M

Scaffold ID

Ga0222714_10010073 Open in IMG/M

Source Dataset Name

Estuarine water microbial communities from San Francisco Bay, California, United States - C33_3D

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	8204
Total Scaffold Genes	24 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	21 (87.50%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	7 (100.00%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

8204

Total Scaffold Genes

24 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

21 (87.50%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

7 (100.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location Name	USA: California
Coordinates	Lat. (^o)	38.0516	Long. (^o)	-121.88	Alt. (m)	Depth (m)	13
Location on Map

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Source Dataset Sampling Location

Location Name

USA: California

Coordinates

Lat. (^o)

38.0516

Long. (^o)

-121.88

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002764	Metagenome	531	Y
F009140	Metagenome / Metatranscriptome	322	Y
F012211	Metagenome / Metatranscriptome	282	N
F020138	Metagenome	225	Y
F034503	Metagenome	174	Y
F044970	Metagenome	153	N
F078383	Metagenome	116	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0222714_1001007311	F020138	AGG	MNQQQTTRLNAFWQDVEAHKALNPSLPETALVILKSVALDALLAAQDIEQIGVNDANN
Ga0222714_1001007316	F044970	AGG	MSDFNDYATMLIAIEQKTKALESKCLNKNYAGFTADIQTIQSQLTLLTMWITQAQCEQVRESTYRILNKV
Ga0222714_1001007318	F012211	AGGAG	MPTDEERFKYECWAIVQELDPEDIADAIGDSVALVEAIKANHAEDVASIVMKRVELKVRRRAELRVFDVVKTQWIDDIEELQHYRNLRIERVQKALDERKIMEAKMDAPFQQMFDE
Ga0222714_1001007319	F009140	AGGA	MRLNLTHRALLKRLSNGPRTMLEMTHSATDNNAVSYHYAKYLPDLEQFGYVINFQEKWHLTEYGRMEMNRAISGAAMRIENGSVKEPYDGKELRRNVFRRGCYDFLKYPSRFGDSQIYKV
Ga0222714_1001007323	F034503	AGGA	MTKDEAHHLLNKRKQGLAVPLYFVNRALVISGDIGMACSPCQATWMEGSGMAQGQGVRELFYPFVDRDNPGLNQRNESTQ
Ga0222714_100100733	F078383	GGA	MKTKGGARPGSGRKPTQISESRAITLWKDGVSKKEIAKRFGVAYQAILYFFKKHKIFNRGKLKSQAPQKPR
Ga0222714_100100739	F002764	AGGA	MKEPEDEAFEELAKRQGDWGLQGSRKHQIMRYAENNARNEVIEEVAQHIEKCSLAFGKDTIQSFTAYVRNMKK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0222714_10010073

Overview

Ecosystem & Geography

Associated Families

Sequences