Scaffold Ga0222714_10009601

Overview

Basic Information

• Taxon OID: 3300021961
• Scaffold ID: Ga0222714_10009601
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_3D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8486
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (68.18%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Associated Families: 7

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 38.0516
  • Long. (^o): -121.88
  • Depth (m): 13

Associated Families

Family	Category	Number of Sequences	3D Structure?
F023321	Metagenome / Metatranscriptome	210	Y
F024533	Metagenome	205	Y
F047012	Metagenome / Metatranscriptome	150	Y
F053899	Metagenome	140	Y
F055551	Metagenome	138	Y
F057311	Metagenome / Metatranscriptome	136	Y
F081259	Metagenome / Metatranscriptome	114	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0222714_1000960110	F057311	N/A	MQRKSSKVNQQKLRLEIESKTKFWHPVSRNGWWIKFSTYRDHYILLMIVSKYTAQTIVRYFEDESEAVAFINFIVTCNPNDLIESA
Ga0222714_1000960112	F024533	N/A	MPALKTCPKCGIQHQKRGQYCSQSCGNGRKHTEEAKARQSKKLTEYHQTPEGAATREKSARITSAIRKGEEWNSVEVDDFAISIPDVTDYVAEYDYTWERAEKW
Ga0222714_1000960114	F053899	GGAGG	MTREFDKIMDRIKNLTEYEVMVPFPKDFEFGGVVPYDMSISGDYAFVKVVAESIEEATLKANEYFESKYK
Ga0222714_1000960115	F055551	GAGG	MNTSKANTNKPWMSDEYDMPVLENEEMWSQRVIDEVIKDLFDELDKDE
Ga0222714_100096014	F047012	GGAG	MKRLFFFVMAVLIALPSYSVTEYRLPFVEIQNGVTKIPFVEHEWTLASERADWLLYVENGMLKEHKDMYEFHATTVYKQPFYNDMVKTEVSKIYTYGILNCKDANLHILFEWFVDPDDTLVFRGSHEFGSYTVEMLTPDTARNEVYNLVCKEMI
Ga0222714_100096018	F081259	AGGAGG	MFNKMLQWFIKPQLTEIEYYISAHNPKNTADVEMLINEFNYKRRLQCF
Ga0222714_100096019	F023321	AGGAG	MFLNQPQFPVFYTFNDLSRKAEDAAVKTIDFNKQFIDNTIAYFDSITDKQFTTYTQKVSTFNQNVAEDAKKIVKSESTKTKA