Scaffold Ga0222714_10008408

Overview

Basic Information

• Taxon OID: 3300021961
• Scaffold ID: Ga0222714_10008408
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_3D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9206
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (75.00%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 38.0516
  • Long. (^o): -121.88
  • Depth (m): 13

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009265	Metagenome / Metatranscriptome	320	Y
F009526	Metagenome / Metatranscriptome	316	N
F026507	Metagenome	197	N
F031795	Metagenome	181	N
F036209	Metagenome / Metatranscriptome	170	Y
F044983	Metagenome	153	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0222714_1000840817	F026507	GGA	MICEHGADAPKFCAICRHQGIMGKAEGITIARESQLNWHDEAVICIRQMARTGKPFTAEDVVDEIGAPGGSGKVIGAAFNTVARSGMIWRCGERPADRKSSHRRMLAVWRGGQVQEQTRLFDGN
Ga0222714_1000840818	F044983	GGA	MKEPISSDAVWASIEGKIRGHYLAAQNLPQACPQCARVLEPVDFGVDPDSNERMWVTHCCGNWEKFYEKLGPADLI
Ga0222714_100084082	F009526	AGGA	MPATYITGRSLTLTINSVSYADQASTVTLEMENNQQVLEVLSGRAYKTVDKTATLNVEMYLDDTSSAGIISALWDAAKNAPDTSLAFSFDVNGDTFTGNLFPVFPTVGGAATDVLTTSLSFVVEDGTVTRA
Ga0222714_100084083	F009265	AGG	MQYTVTTKQGNNYIVSDESAWLWIEIERELGYTVSQAADKMSQGSLDVITCMLYKAAKAQGHTKLPSQQAWVTNEFETFEVVEESPKES
Ga0222714_100084084	F036209	GAG	MVMADKVTVKMTPDSRDLRSLYKAFREMDEGAKKALKDDVTSISQWSATEMQSSYNLNPLPAQAQKVAATIRANKDRIPNVTIGGSKGRFSGGAVSGQVLFGSEFGGPSPFANGGRRFPDRSPAQGRGNAGYGIFLTLKRIQPELTRRWKDAVNRRVIEKWDDNNG
Ga0222714_100084086	F031795	N/A	VIFAGVNEYADNTISNISISLGRRDIYEQALVGIANVRLWTDADTALNVNLSDSIQIQIKDSTNTYRTIYTGTISDLDISLDAYGSEGSVAIYSITAVGPLAILNRFTTGGLGFAKEFDGTRVLNILSDAFLENWNEVVPTLTWSAVSSLATWDNWGGANQTLVDNLIADIDTPGTYELTAYSDGVANALTLAQNAAQSGRGFLYEAPDGSIHYDSYTSRATQTPLTLTDDDLLAVGLRQAAQWSEIVNDVTLTYKNNQKKYAADYTSQQSFGELSGSRSTQLENGADAQSQADAFLESRAFPRIYPEELTIPLHSPTVSDATRDALILMNVGAAVYTQHLPTVFGGTFNGFVEGIKWNLDRYTATMTLICSAISETYPNIIWLQIAPTVTWAGYTPTTTEWQDL