Scaffold Ga0222714_10007610

Overview

Basic Information

• Taxon OID: 3300021961
• Scaffold ID: Ga0222714_10007610
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_3D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9863
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (71.43%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 38.0516
  • Long. (^o): -121.88
  • Depth (m): 13

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016936	Metagenome / Metatranscriptome	243	Y
F024061	Metagenome / Metatranscriptome	207	N
F029363	Metagenome / Metatranscriptome	188	Y
F059946	Metagenome / Metatranscriptome	133	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0222714_100076101	F029363	AGGA	MENDDDNEMLWAAQDLRTLTSNKAEITISRRVTIKIGAIKPSWDYQITFGDILNRGAWRWECAQSDELEGAMDIARGQITVQGDEKNRELLQLTDAAAKLGLKLVEAAP
Ga0222714_100076103	F016936	AGG	MNLELIHAELVRIREALEARPYASGAPAAKPAAAPRSDEVPMPTEIIDDAGNVQVHFGKNKGVALSALGERSVAWYAQEAEPRIGNNGKPFPPRPEDVLLRNAARTIIHQKRGTIAGAAVPTAPVANIDEGNVPF
Ga0222714_100076105	F024061	GGAGG	MNAGEIKNQAVINNATEQFRSLLETHFIAIARAAEESFVEDENQTEPKAKATFAVEWDALSLAPKVVVKIGWSVRYKDESEAMVDPLQSKLGLMEDSK
Ga0222714_100076109	F059946	N/A	MNKRKSNEAKRIQCDAMLAQFLPVKTVAMALRMSRGTVSERAKRAGMTRHYITEAEARLLFKNRIGGVAK