Scaffold Ga0222714_10006823

Overview

Basic Information

• Taxon OID: 3300021961
• Scaffold ID: Ga0222714_10006823
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_3D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10577
• Total Scaffold Genes: 27
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 19 (70.37%)
• Novel Protein Genes: 11
• Novel Protein Genes with Ribosome Binding Sites (RBS): 8 (72.73%)
• Associated Families: 11

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Crocinitomicaceae → unclassified Crocinitomicaceae → Crocinitomicaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 38.0516
  • Long. (^o): -121.88
  • Depth (m): 13

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001561	Metagenome / Metatranscriptome	670	Y
F003750	Metagenome / Metatranscriptome	470	Y
F004476	Metagenome / Metatranscriptome	436	Y
F004583	Metagenome / Metatranscriptome	432	Y
F007310	Metagenome	353	Y
F008494	Metagenome / Metatranscriptome	332	N
F013084	Metagenome	274	Y
F013087	Metagenome	274	Y
F040618	Metagenome	161	N
F070110	Metagenome	123	N
F103250	Metagenome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0222714_1000682311	F004583	AGGAG	MKSTRNSDRLREILVNTRHQIVSLKDIQIDLLRHDTKVANQVSQQISALEEVYKHQLSLVQLAEALEPKRAGWFSGHIKTKEDRLANILD
Ga0222714_1000682314	F007310	N/A	MRTVLWNNSERWFNHHHYELLIEDITGFALKESLCAESVRYMAKRLKDTPYNRTFRSKYSIYPDEYNALVEKFNNQAENNGKIEVA
Ga0222714_1000682315	F013084	N/A	MGIMNVLGMMQEARDVALSRGHNVKNWDVLGGDCYSLECKDCKMQIMVKEHPLPNEVQLSGEAIAVNCVKPEKKKLSKKT
Ga0222714_1000682316	F070110	GAG	MGGFYLPITPMFLDDFPIVIWFVRKSRNSYLLFDSANQLVMRRDEKRKKEIYQYCAENGIEVQDEF
Ga0222714_1000682318	F103250	AGGA	MQKIEIKTQYGWSTAKIGRYTNGHIGIQLFQDGMPLAKISTNLNDIELEPREFHFDDNNCGSIKEDVLKSGHFEDTGKSHKSGWCEYPVFKLKDHVEVVEG
Ga0222714_1000682319	F008494	AGGAG	MNKQDAITSFMKAVKTYTTSIDKTAQANISYKKAVYALEDAVNQIYRDVDVKELGSNAEQRNAKISAQTSELILAKRELEYQLEVARAEETRAKTECDQIKYIIRALEVKEEA
Ga0222714_1000682321	F001561	AGAAGG	MQTPEQKLKYLNKTIETLWHGVSDTKDGDYPKIINLYKEVLKINNKDRDAWENMIWLMWSMAVNKKDTAWLLEAEKFAKRYLSIMPNGYRSYEYLGTFYRSMIKDERLAIRYYESAIRWKDAETSTHHSLIALCIKNDDLVKAKDYCLLTLKRYPKDAYATMRLKDLNAR
Ga0222714_1000682322	F013087	N/A	MQSQVWIYFSKTGTGYEMSGSDIISGIDAFLNTDGTYLVEYCFSDIKDSMHFFLYEWDKSQKKRRTIFEGYQRQNILVNFAKNVHVCHNVRQEIYKEYMMQLEDEKVNNANS
Ga0222714_100068236	F040618	GGA	MTVNVKDVSKKSSCIGFVGQGTWFDGKPFIVTQYQASPSYWYFFVYNDFVPQENFFNGFDGVYSYGKEIWHLNPDNGYFSGTVYLYSAMTETLYIPYSISQPKRETSPTFLFEIS
Ga0222714_100068238	F004476	AGAAG	MLFSKQGFKTVDTTEEFVKQVMEFGQKDIVLSVTHSNGVIDIVVSPTMDAIEADVYHFLNDETELKYTMPIKSLTASYISSLSLTSAIHTYLSEAFKVADIFARTTRQSTDYAK
Ga0222714_100068239	F003750	GAGG	MTLDMVNRLLYLVVWGGGFVAFWQITKHMPKVLYTLLECISVMICSVLLLTPISMIIEYILVGNIHITMMYVAGLCGIGLLSGIWMVMVQSSRALQGKKQYQDVIL