NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222714_10006542

Scaffold Ga0222714_10006542


Overview

Basic Information
Taxon OID3300021961 Open in IMG/M
Scaffold IDGa0222714_10006542 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_3D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10859
Total Scaffold Genes27 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)25 (92.59%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)38.0516Long. (o)-121.88Alt. (m)Depth (m)13
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015204Metagenome / Metatranscriptome256Y
F017819Metagenome / Metatranscriptome238Y
F027494Metagenome194Y
F065707Metagenome / Metatranscriptome127Y
F077027Metagenome / Metatranscriptome117Y

Sequences

Protein IDFamilyRBSSequence
Ga0222714_1000654215F077027GAGMNFNLNIHRVKSIRLSAIRPSQTGELQSASRDLVIETEEGSFELSLFSVYVSEDDDQELLEVKV
Ga0222714_1000654222F017819GGAMKKRSKYKPRPVLQNPLEFVLSGLKPVRDLPGVYLEVQIKNRQALEQLRKGDAAKQDIDLLIGAFNITEALAILGLGYDWLQEINEAQTALWELARKGVERNMRFIMTAKQWEALKLVMDLHEEQLANATVYDIEKAHDFVQHVLRQGKAHAIVQTQKEST
Ga0222714_1000654225F027494N/AMKYKTEMTLPVELTFEILEPMEVDGTELPAQLDITKVLMQTIGPNGKPRQVDITKTLTEEQMFLLEDEIVEHFTNENPPV
Ga0222714_100065423F065707AGGAMRPAEFSTENPPRPIDCVETREYIASLRRRIEVQQDSMEHLANQLFTLKVRNRWLEEEVEKLSLDLGIQQGEGGPAWREVPK
Ga0222714_100065429F015204GGAGMSFQEWWNGLTKAEMKVLGEGQARFVWEECQKHTLMTIEEACKAQVAYDEGFRQGQARYQVQVGGWTLSPGVQPGMIWISDAGGEGGDFHIHELAQVIGRFYREKF
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