Scaffold Ga0222714_10005997

Overview

Basic Information

• Taxon OID: 3300021961
• Scaffold ID: Ga0222714_10005997
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_3D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11427
• Total Scaffold Genes: 27
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (22.22%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 38.0516
  • Long. (^o): -121.88
  • Depth (m): 13

Associated Families

Family	Category	Number of Sequences	3D Structure?
F023350	Metagenome / Metatranscriptome	210	N
F046371	Metagenome / Metatranscriptome	151	N
F049635	Metagenome / Metatranscriptome	146	N
F071250	Metagenome	122	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0222714_1000599718	F023350	N/A	LTLDHYIEGHYKKFKELAKNISRGEDYYEDLLHDSLLSMFGSKHIENLIDTGDFEFYLIRVMYLAVNSPTSPFYRQTIAWNRNRRDFKEYAHEVDKTWLGARMTNEQLDILISRLTEFERLIFQEYILEDFTYRELSKQTGIPTVFLYRTIDSIKQKIRANVIRKIK
Ga0222714_1000599725	F046371	N/A	MSENKLNFLKSQISAFNPTWTKEQIEMEAIRIYNEANTIDDDDEGCLYCGS
Ga0222714_100059977	F049635	N/A	MNKAIYKTPFGRLVKSQFKTLTNFKTALRISDPTARLYVAHPERMRIKDFNNICLHTGLSREEVFSTFTPTKLINEEND
Ga0222714_100059978	F071250	N/A	MKKLISLENRVEKLLKKYKTLRNNNKALCVKVWEQQFDERKDITSNFFAMYESGKYVSADNITRIARLVKEHNPELRGTNHATNKKKEQLIKPLLKK