Scaffold Ga0222714_10005859

Overview

Basic Information

• Taxon OID: 3300021961
• Scaffold ID: Ga0222714_10005859
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_3D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11565
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (22.22%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 38.0516
  • Long. (^o): -121.88
  • Depth (m): 13

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003583	Metagenome / Metatranscriptome	478	Y
F014261	Metagenome	264	Y
F021297	Metagenome / Metatranscriptome	219	Y
F088512	Metagenome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0222714_1000585916	F003583	GAG	MAKEKPQSGSANLLLAVSLLTAFAGVTALASAFIAGFVLDQILNSPEAMVMIIVDGAIKSDSAALEKNLSWATLGLKAVQDLGWALAVGCLGVGVAVFLRSRRQKAS
Ga0222714_1000585917	F014261	GAG	VGNTAHHMKLLIAIIILGWVAAVTFFGPELARAINAPEAPKAKVHRRAR
Ga0222714_100058592	F088512	N/A	MGTKSPRHIIEAVLDTYLTAESGLAGVAVYTGDNAEINVLPKCVVLCDAARTPPELPEGAGNFYCSIRLTIFSNADDTTLTDHRARCAAVAGAMQDVTSIKAAFVAGGDAVCYDVIPESEDEGRDERSWATVLSYTVPMVVNPQA
Ga0222714_100058599	F021297	N/A	MSNTVTISQGNSFACSFVWTPGPSGPANLLTTTLTSTFEDKCGNQYPLTVTKALDGLSFTVSYPGDTADWSVGLGRWDIKFAFSSTSISRTEIFRVQVIESVTA