NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222714_10005461

Scaffold Ga0222714_10005461


Overview

Basic Information
Taxon OID3300021961 Open in IMG/M
Scaffold IDGa0222714_10005461 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_3D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)12077
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)16 (94.12%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)38.0516Long. (o)-121.88Alt. (m)Depth (m)13
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004432Metagenome / Metatranscriptome438Y
F040085Metagenome162Y
F042804Metagenome / Metatranscriptome157Y
F046898Metagenome / Metatranscriptome150Y

Sequences

Protein IDFamilyRBSSequence
Ga0222714_1000546113F040085GGAMNLPDRPAIRHAYERAVVALLNASDSTEEEAEAFVDAMADLIFTTMKQYIEEEEQDATHN
Ga0222714_1000546116F046898GGAGGMQALEGRLMKERQLDIFEQRDHQFLERCRALAVVLCKQQGQVSINDIRQFIEVPPGVHPSVLGAVFRTKQFKRVGYIEAAHPQAHARVVRVYSLATSKE
Ga0222714_100054617F004432GGTGGMTAAKTKPAVKRTRKPAAPKVVPVAAPAPAAKNPDTIGRVVDLIKWVDSPFKLLTVILLSFLAFAGYFAWDSRQVILQAIQNQDHMPQLAKQEDLIAPAQSLMKDVDGVVLLVHKANLTTNSRTTVLALNADGTREKKIEGSVTSLFNASADRNAAMVAMLNNEVLCEEFNPSSKVGEWGVKAGVKFMCRGSIPPDPGKFAGYVAIGFKEKPEDIGALKTRINLASSDMADE
Ga0222714_100054618F042804AGGAMQLSMWLTTNGNNCSSEQLLTIWNNLAMWAGVADSAELRGKLLHYFAKAREREDKK
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