Scaffold Ga0222714

Basic Information
Taxon OID	3300021961 Open in IMG/M
Scaffold ID	Ga0222714_10004954 Open in IMG/M
Source Dataset Name	Estuarine water microbial communities from San Francisco Bay, California, United States - C33_3D
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300021961 Open in IMG/M

Scaffold ID

Ga0222714_10004954 Open in IMG/M

Source Dataset Name

Estuarine water microbial communities from San Francisco Bay, California, United States - C33_3D

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	12844
Total Scaffold Genes	9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	8 (88.89%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (100.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

12844

Total Scaffold Genes

9 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

8 (88.89%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (100.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria → Proteobacteria

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location Name	USA: California
Coordinates	Lat. (^o)	38.0516	Long. (^o)	-121.88	Alt. (m)	Depth (m)	13
Location on Map

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Source Dataset Sampling Location

Location Name

USA: California

Coordinates

Lat. (^o)

38.0516

Long. (^o)

-121.88

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F008619	Metagenome	330	Y
F014737	Metagenome / Metatranscriptome	260	Y
F023109	Metagenome / Metatranscriptome	211	Y
F073561	Metagenome	120	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0222714_100049542	F008619	GAG	MTVNNRRMVGQQVARSGYITVAQYLTSVPWVFTVVPHNYLYYPDAREIIQTIDNKDRQLPETIIFDSSNLAWFTEYQGDVLSPSFTLASTPTPNTQTLSMNVGSGTGYAFRAGDFCMIAGFTYKVTADVLRDTGTVNVPIHRPLIGSPTSGATVDVGNDCTFTVVAESCPIYTLTPMTNGAFVNWDGAFVFREYIT
Ga0222714_100049543	F014737	GAG	MTTIAAVSNPQIRHAEFVRLTVGLTEDVYTFCNAASPVTVDGITFSNLGALLTVGDVQRDMRSTSDDMTISLTGIDSANISIILGNDIKGSLVEVWRGFLDSDNQIITSPSQQFFKRYQGIINSVSISENFNTQMRTRIATCSISCSSMRRVLENRLSGIKTNPSSWQVFYAGDTSMDRVNTIANTYFDFGRPPKKQTQSSDATQEVDIGGAP
Ga0222714_100049544	F023109	GGTGG	MIRQATRYDIPRLLEIVEAYAFENPIKTLRKQENHDPKYVEELLLGIIVGRGFILIDNYMRGALIAVRQRNVWSPTVRELHELLWWVEPDHRSGTVGGRLWKTFDDIAGEMLTSGKVDFVVTSSSASGPQIGYQKRGYEPIGCAFVRE
Ga0222714_100049546	F073561	AGG	MPVFSKNVITQVSGFDNALLSGELVWDQKTFWNLQLKSSGTIVDLTGATVGASIVRRTVTNLVDTRNGLTFDVGDYDPTPTPINLVIENLNPTNGSFTLVIDDSTWDLINSDPELAIDINNPVAFSGRLKVEYPAINDDPPQDFIIFLFFLVRSDGIVKV

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0222714_10004954

Overview

Ecosystem & Geography

Associated Families

Sequences