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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300021961 Open in IMG/M |
| Scaffold ID | Ga0222714_10004697 Open in IMG/M |
| Source Dataset Name | Estuarine water microbial communities from San Francisco Bay, California, United States - C33_3D |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 13268 |
| Total Scaffold Genes | 32 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 11 (34.38%) |
| Novel Protein Genes | 6 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (50.00%) |
| Associated Families | 6 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: California | |||||||
| Coordinates | Lat. (o) | 38.0516 | Long. (o) | -121.88 | Alt. (m) | Depth (m) | 13 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F009945 | Metagenome | 310 | Y |
| F011473 | Metagenome | 290 | Y |
| F011827 | Metagenome | 286 | Y |
| F025916 | Metagenome | 199 | Y |
| F026794 | Metagenome | 196 | Y |
| F051685 | Metagenome | 143 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0222714_1000469710 | F011473 | N/A | MNWKKYITDPATNRPKRGAISRIAALLGTHYGDVRRMFDGVWTPTDAEAKGLRAIVASRTNLAPKKRSDAGKKRGEYRKRAAVKSCAVPPQLKGLRSAKKAALK |
| Ga0222714_1000469716 | F026794 | GGA | MMHSGDNPGSISERDLRVTASQQFFADLDAREATRGEVTFDEIDRRYADPISREEAVALRPFFEAFCDGRSVFRYECKMRHGRPMHVWQAIHEFDLHDSPLSLSLSWRDDDPFAEQI |
| Ga0222714_1000469719 | F009945 | GAGG | VSALATFKRTHGVATHRLAGAGHRYAWMAFFTTVRMKDGTRRAFTELAHEYSMASLMRRNKIADADTELEACQFLAERNSFPWPADEPKKRKS |
| Ga0222714_1000469729 | F025916 | AGG | MAEGATEEDPKNEPTPMPTHLTRPLLGCRLRDCGAPDCPTCAGAEAARLYREQQACDHDEHEHGHCLACGADITDTLAGLAEDAADAAQDR |
| Ga0222714_100046973 | F051685 | N/A | MSTPNWLRFRAGERAHVVTGMSGPMHLTPCGFAAHGATGVVDKRARKCRTCSRAVRPVSPQEWRKAGHFPE |
| Ga0222714_1000469731 | F011827 | N/A | MRNVTHSANTHNLTKSRWKARDAVASKRHGETCDDIRLACHLWLLKRCHGYAEEHAEHVEQYARGLGRA |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |