Scaffold Ga0222714

Basic Information
Taxon OID	3300021961 Open in IMG/M
Scaffold ID	Ga0222714_10004328 Open in IMG/M
Source Dataset Name	Estuarine water microbial communities from San Francisco Bay, California, United States - C33_3D
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300021961 Open in IMG/M

Scaffold ID

Ga0222714_10004328 Open in IMG/M

Source Dataset Name

Estuarine water microbial communities from San Francisco Bay, California, United States - C33_3D

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	13973
Total Scaffold Genes	23 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (13.04%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (33.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

13973

Total Scaffold Genes

23 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

3 (13.04%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (33.33%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location Name	USA: California
Coordinates	Lat. (^o)	38.0516	Long. (^o)	-121.88	Alt. (m)	Depth (m)	13
Location on Map

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Source Dataset Sampling Location

Location Name

USA: California

Coordinates

Lat. (^o)

38.0516

Long. (^o)

-121.88

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012771	Metagenome / Metatranscriptome	277	Y
F027440	Metagenome / Metatranscriptome	194	N
F037195	Metagenome	168	N
F043895	Metagenome	155	Y
F044452	Metagenome	154	N
F093769	Metagenome	106	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0222714_1000432810	F037195	AGGA	MNIFNPTNPQPQHNPTELLKQAENLLNKTERKQGWPYYDIKHALQFAQMVIKLSKIPSKKATINTLTLRQQPQTVRARLSQGKAFIVDKGIDVLKGQIDPDDMPLVSELAEKVQISVRKVNLIIELVEPVDNILDAMTPLLGGTDEDPFAFNEDVFREELLEFINTGEIGSQASWQNYTNSAEKYARQLALQDNTLIIETTPNELIIMKMSEEMLKGLE
Ga0222714_1000432811	F012771	N/A	MNGKIKRPTSKVFVVSDDTHKKLKAYAIKMGYKLQYVADEAVVEYLKRKEIKQ
Ga0222714_1000432819	F027440	N/A	MSTKNLELVASFAGSVFTSDTDGNPQFATHERHVRKTAKSPERTVSFQAPILSVSDLQYYIKRGEALAEIPTEHVTKVKNEDGSVTETKRISNALSDLVKEHLLDVAEEASEAYLSKGNTPDFFASFIYGVSADRETEKSVLKKIDGIKSEIGSLVFALAGEWNDDTARSLGVSDKDAAIAKQSNLIGSLAQLLAKANELASAKAKREAKKKTV
Ga0222714_1000432821	F044452	AGAAG	MTNRCLRCLEVIPQDRKSLGFDRCIKCAPQWTYKGALNFGHKTGGSVQPMHPDAFKVHKRVTHRSAKGTNGKSFQQGTTLITIKDA
Ga0222714_100043286	F093769	N/A	MSNPSLNELDLLLGLPKPVEEMTDKELERFLLKHFPHTRPSGTDLASLLNDPLLKGIDVQAIINQTQNFKFKK
Ga0222714_100043288	F043895	N/A	MLSLTFFTAETTLIALQQDFDAKLRALSQIESNDNDKAKGRHGEISRYQLKRSVWKQHFPDEKDGRHIPDKARRCAKAHLCWLELRLCLAQRVNNPQPRDVYAAWNIGLEAFSRRDYNFDRLPDSIKQRADRFTNLYTEFRNSQ

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0222714_10004328

Overview

Ecosystem & Geography

Associated Families

Sequences