Scaffold Ga0222714

Basic Information
Taxon OID	3300021961 Open in IMG/M
Scaffold ID	Ga0222714_10004144 Open in IMG/M
Source Dataset Name	Estuarine water microbial communities from San Francisco Bay, California, United States - C33_3D
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300021961 Open in IMG/M

Scaffold ID

Ga0222714_10004144 Open in IMG/M

Source Dataset Name

Estuarine water microbial communities from San Francisco Bay, California, United States - C33_3D

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	14367
Total Scaffold Genes	28 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	11 (39.29%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

14367

Total Scaffold Genes

28 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

11 (39.29%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (50.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location Name	USA: California
Coordinates	Lat. (^o)	38.0516	Long. (^o)	-121.88	Alt. (m)	Depth (m)	13
Location on Map

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Source Dataset Sampling Location

Location Name

USA: California

Coordinates

Lat. (^o)

38.0516

Long. (^o)

-121.88

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001298	Metagenome / Metatranscriptome	727	Y
F001923	Metagenome / Metatranscriptome	617	Y
F017613	Metagenome / Metatranscriptome	239	Y
F088512	Metagenome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0222714_1000414420	F001923	N/A	MSAAPVNPDDIPPEVKDGVVASILGGLAMTARLLLSTEPVTFGWVVRRVLAAAITAALVGYAVQDHIQSTGLKMAAVGASGYAAPECLDYLLKWLKAKGEAEVAKVSKGVKRAAGKAKPKARR
Ga0222714_100041443	F017613	N/A	MANSITAAPAVLAEGVIGSLKNKLPVLSGISTVFSSRPGVNGLSIQVPLIGTSTATTFGASGYLTQDDATVGSATCTLVHYKVSSRFSPSNLKEYGAQFFVNNFVQTASIALAQKVMDVINAQVTNANYSASSTSGADLSYAELVAVQKTLDDAKAPGPRYAVLNSTYVSDLRKDTTIVGNNVLGANIIRDGDLGIIAGARVYQFSNLSANSENLAGWVAGPDAIAFASALPETDIPGWEVANAIDAETGLGVQVIMGQEQSGYMNVTATLLAGAAVGRATSLVRLKTA
Ga0222714_100041444	F001298	AGG	MATLYSEFLPDAKEMLADFGVAGSANSGAITFVCMLSDPALTQSFEAGGFKEMTQHTVRLAAATASWSLPDGSTGASAAVISSGSPIASLAIGKKIVAGGKTLRITGQTYKPGSAWLTLVVIDDNQ
Ga0222714_100041446	F088512	GGA	MGTKSIRHIVEANVASFLAAETGLAGVTIYTGDAVDLNVLPKAIVLCDSARAPADLPEGAGNYSCSLRVTLFSNADDTTLADHRARCAALAGAMQDLAGLKAVFVTSTDATLYDVTPISEDEGVDERSFATLFAFDLLAVLPA

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0222714_10004144

Overview

Ecosystem & Geography

Associated Families

Sequences