Scaffold Ga0222714_10003974

Overview

Basic Information

• Taxon OID: 3300021961
• Scaffold ID: Ga0222714_10003974
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_3D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14752
• Total Scaffold Genes: 36
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (27.78%)
• Novel Protein Genes: 13
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (7.69%)
• Associated Families: 13

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 38.0516
  • Long. (^o): -121.88
  • Depth (m): 13

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000962	Metagenome / Metatranscriptome	820	Y
F007859	Metagenome / Metatranscriptome	343	Y
F009135	Metagenome / Metatranscriptome	322	Y
F009604	Metagenome / Metatranscriptome	315	Y
F010081	Metagenome / Metatranscriptome	308	Y
F014847	Metagenome / Metatranscriptome	259	Y
F016528	Metagenome / Metatranscriptome	246	N
F020529	Metagenome / Metatranscriptome	223	Y
F027823	Metagenome / Metatranscriptome	193	Y
F028095	Metagenome	192	Y
F038644	Metagenome / Metatranscriptome	165	Y
F041152	Metagenome / Metatranscriptome	160	N
F042296	Metagenome / Metatranscriptome	158	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0222714_1000397416	F010081	N/A	MKEQIDSIIKKHCLKMQEVDHTKSIPMIVKQLDGIVYDMYRELYGLRDIRSNNYYLNSFTADNKKGHCC
Ga0222714_1000397417	F007859	N/A	MKKLLIITLLCAGCETGMFLRYSYNRALEKLPPCSKVHAINNNYITYSMEEQSTNNVYTTHTNYYRAYYNVDGKITKTIKN
Ga0222714_1000397418	F042296	N/A	MNLFKSVIKWTGVGVYACFLATIAYAATMPEPIKLYVIYTYKFNERVIEKIFIKKDNAQKYCETYKDNHDYTFEEITVKE
Ga0222714_100039742	F027823	N/A	VNVTAAINVPCVSQTNLWKGCFESHFMSGREIDAKYPILNTKWKYSHHKLLDCYDGCYYAYEKDIGTGIMFDPWLREFKVNMPIADDVYIYIIDDVYKSKMYYTTVESNVILLVVI
Ga0222714_1000397420	F009135	N/A	MNKAKYYLQINLPPNFDDEDAESIRKDLMTYINSKNQYGAMYGPKASTKGITINKVMYRTNED
Ga0222714_1000397428	F041152	N/A	MNIVDYIVNNWDNLPKSKFDDVIVVIFKEIQNWDEGYGHHTYEGYGVDKDGNVTWCYSSGCSCSGTPQTEIKKDLKTFIVDDGIDLNVDPSTIDFNSLEVEFNSY
Ga0222714_1000397429	F009604	N/A	MINCGCGNEIHPERYALGYKVCLKCGDKSASKQKPYGYVHYGHKTAGSIVITSKKGFDNYSKVSYRMNKGSNMGYASRLSTSF
Ga0222714_100039743	F038644	N/A	MSSIRITQLPNGPWREYALEAERRGLEKISDCRLSGTDVILIGAIDMIRELNEKITKLESKSE
Ga0222714_1000397434	F020529	N/A	MFSNYNIWKYCAKYFFILTIGAYLYDVSTRLINQKSDVANLVGTALFAGLFVSSLLILRSDVTKLAKNLKEDKTNE
Ga0222714_100039746	F028095	N/A	MIEQTYMKLQDKVTRPKLTKEKVNRENKHFKRVVDQYINWCKQGGGYEETRETYEDDIINCLFEFDHDGYYLATFLNENAYIEPDSELVDILDSVQFVAHSLTNEIIGQWTKENFLEIPSDVIGKKVNAKQGYKKYENHYITGIKPETYEVTISDDINKKGGWIIRYEDITIL
Ga0222714_100039747	F000962	N/A	MNIHVPEEIKNKYPHMEFRGKQRIINDRTVIEAYNHATEQNFYYSFDEDFFWFAGEIPNYKLPKVS
Ga0222714_100039748	F014847	AGG	MEFESNEEILANTMDCIRNLHEENARLMQEIEQLKEDNKELNRKLKSIQALFL
Ga0222714_100039749	F016528	N/A	MINNNELFAKILAENPLPYRFGDKVNTNRGIGFISGYNFKEREKLWKFTIRPFGLTNYYTDVETVYGKVE