Scaffold Ga0222714_10003965

Overview

Basic Information

• Taxon OID: 3300021961
• Scaffold ID: Ga0222714_10003965
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_3D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14772
• Total Scaffold Genes: 29
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 25 (86.21%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 38.0516
  • Long. (^o): -121.88
  • Depth (m): 13

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001097	Metagenome / Metatranscriptome	780	Y
F014143	Metagenome / Metatranscriptome	265	Y
F017294	Metagenome / Metatranscriptome	241	Y
F087188	Metagenome / Metatranscriptome	110	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0222714_100039652	F001097	GGAG	MKIDWPANDTRGIGSLQKLRSNGVAQTLPSQEIDDWLKQSIALVAGCVKGLGTNQRRVRYFGFETAHGNNSQTNQKG
Ga0222714_100039656	F017294	AGGAG	MRMMHLNKGGQGWATKTACGRNMLRTPMSTNWEDFKKEPIEYRCIKCLSSKQFELNTRMDKKKS
Ga0222714_100039657	F087188	GGAG	MTKLFKAECYFQQEQYNPRIRATVPPAWVVEFDCALPNTNVPPVFFGITRREAIQNAIDCLKSRGLTGRLILN
Ga0222714_100039658	F014143	GGAG	MNTRFLRHVRKIFATYDAPPQTIRHYQRQWIRSIRNLGDNWLVAKQIKRIEQ