NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222714_10003912

Scaffold Ga0222714_10003912


Overview

Basic Information
Taxon OID3300021961 Open in IMG/M
Scaffold IDGa0222714_10003912 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_3D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)14887
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (37.50%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)38.0516Long. (o)-121.88Alt. (m)Depth (m)13
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004112Metagenome / Metatranscriptome452Y
F011844Metagenome / Metatranscriptome286Y
F067666Metagenome / Metatranscriptome125N
F103223Metagenome101N

Sequences

Protein IDFamilyRBSSequence
Ga0222714_1000391210F004112GGAGMIRGNERKKIDAYKQTRLLMFTMVRLMGDPKTAPKTPEALWELPGDEHIENVMSEDEMREIFKRLGK
Ga0222714_1000391214F067666N/AMIGEHNLRPIKKGDTWVMTLAFYDDECETTPINVSTYVFKLQAKNASGTVIFEWLDATFAQIDNFTRRVTLSPTTTNGYTAGEFTYELQVSIGANSYTWMQGYVQVDTQITS
Ga0222714_100039127F103223N/AMKDCSNNIRTQYLSVLNGNISYNGRNVPVYGTDSFSTVPENYVIIGDITETADNNNQLFVSGADVVIDIFSEQYMTRNNAIIDDIADQILTLLIPTTGVKDMGDAEFQIYATARTSSRYLTMQEGNNFINRKILIINNSIIQK
Ga0222714_100039128F011844N/AMGQILGSLQNVEIDVAGGSSYKNLVCLRTSSVNTTVDSTTEQTNCGPLTSVADATMGVDFDAICEVSPSVSQVSYEDLLAAMVGKTLVSVRVQNPVVSGSSAGAAYYHQFTGYITSLTLNQSTTEFINFSGTVTSTGIVDVTA
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